Gene detail

Detail information of GWHGAAZE008086

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008227413.1	0	PREDICTED: DNA polymerase delta catalytic subunit [Prunus mume]
Swissprot	tr\|Q9LRE6\|DPOD1_ORYSJ	0	DNA polymerase delta catalytic subunit
trEMBL	tr\|A0A061F522\|A0A061F522_THECC	0	DNA polymerase {ECO:0000256\|RuleBase:RU000442}
TAIR10	AT5G63960.2	2E-176	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60996315	61002538	+
GWHAAZE00000002	mRNA	60996315	61002538	+
GWHAAZE00000002	exon	60996315	60996377	+
GWHAAZE00000002	exon	60996493	60996606	+
GWHAAZE00000002	exon	60997584	60997698	+
GWHAAZE00000002	exon	60997783	60997955	+
GWHAAZE00000002	exon	60998086	60998164	+
GWHAAZE00000002	exon	60998267	60998367	+
GWHAAZE00000002	exon	60999668	60999742	+
GWHAAZE00000002	exon	60999831	60999920	+
GWHAAZE00000002	exon	61000009	61000169	+
GWHAAZE00000002	exon	61001098	61001171	+
GWHAAZE00000002	exon	61001410	61001497	+
GWHAAZE00000002	exon	61002259	61002538	+
GWHAAZE00000002	CDS	60996315	60996377	+
GWHAAZE00000002	CDS	60996493	60996606	+
GWHAAZE00000002	CDS	60997584	60997698	+
GWHAAZE00000002	CDS	60997783	60997955	+
GWHAAZE00000002	CDS	60998086	60998164	+
GWHAAZE00000002	CDS	60998267	60998367	+
GWHAAZE00000002	CDS	60999668	60999742	+
GWHAAZE00000002	CDS	60999831	60999920	+
GWHAAZE00000002	CDS	61000009	61000169	+
GWHAAZE00000002	CDS	61001098	61001171	+
GWHAAZE00000002	CDS	61001410	61001497	+
GWHAAZE00000002	CDS	61002259	61002346	+
GWHAAZE00000002	three_prime_UTR	61002347	61002538	+

Transcript Sequence
>GWHTAAZE008094 ATGATCTTGTGGAGTATTTGGTGTCTGATATGGGCAAGATACAGGAATGTTGTCTTTGTAGATGTTATATACGGAGATACAGATTCGGTTATGGTGTTATTTGGTGTTGACAATGTCGATGCAGCTATGGACTTGGGCAGGGAAGCTGCTGAATACATTAGTGGAACTTTCACAAAACCCATTAAACTAGAGTTTGAGAAGGTTTATTATCCGTACCTACTTATTAGTAAGAAGAGATATGCTGGCCTTCTATGGACAAACCCAAACAAGTTTGACAAAATGGACACTAAAGGCATTGAAACAGTTCGAAGGGACAACTGTCTGCTGGTTAAAAACCTCGTTAATGAATGTCTCCACAAAATACTAATAGACAGAGACATTCCTGGTGCTGTTCTATATGTCAAGAATACGATTTCGGATCTTCTTATGAATCGCATGGATTTGTCGCTTTTGGTTATTACTAAGGGCCTCACAAAAACAGGAGATGATTATGAAGTAAAGGCGGCACATGTTGAACTCGCAGAACGAATGCGCAAGGTTGGTGGTTTCTCATTGTGCACAATGTTGCCGTTTAATAACTTTTCTGACCTTATTCTGTCTCCACCTCCTGTATCTCCCATGTGTTGCTACTTCATGACATGCATGAGAGATGCTGCTACTGCACCAAATGTCGGAGATCGAGTTCCTTATGTCATTATTAAAGCAGCGAAAGGCGCCAAGGCTTATGAAAGATCAGAGGATCCCATTTATGTGCTGGAAAATAATATACCCATAGATCCTCAATACTACCTAGAAAATCAAATTAGTAAGCCACTTTTAAGGATCTTTGAACCCATCTTGAAAAATGCGAGCAAAGAACTACTTCAAGGAAGTCACACAAGATCTATTTCGATCTCAACTCCTTCAAACAGTGGCATAATGAAGTTTGCTAAGAAGCAACTAAGTTGCATTGGCTGCAAAGCCTTAATCAGTAATTCAGATAAAACACTCTGCTCACACTGCAAGGGAAGAGAAGCCGAACTTTATTGCAAAACAGCAGCTAATGTGTCAGAGTTAGAGAAGCTTTTTGGGAGACTCTGGACACAGTGTCAGGAGTGCCAAGGCTCTCTTCATCAGGATGTCTTGTGCACCAGTCGAGATTGTCCAATATTTTACCGAAGGAAGAAAGCACAGAAAGACATGGCCGAAGCCAAAGTCCAATTAGACCGGTGGAGCTTTTAATTCTCATGAGTCATTGTTGCTGCTGTGTTTTATCCTAATTTTCCTGTAAGAAATGTAAAATGGGTTTGGCTTTTGCAAATTCATGAGTCACGGCTGTATATTCCAACTGTTACCTTGAGTTAGGAGGTTTGTCTAAGAGGGTCTTGCACTTTGCTACGGCTGTATATTCTAACTGGTAAGAGTCTCACCAAG

Network for GWHGAAZE008086

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00136.22	DNA_pol_B	20	179	1.80E-49
PF00136.22	DNA_pol_B	215	279	2.90E-14
PF14260.7	zf-C4pol	316	387	6.60E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02327	POLD1	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0000166	molecular_function	nucleotide binding
GO:0003676	molecular_function	nucleic acid binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.461
	SRR3591706	second leaf	6.240
	SRR3591707	mature leaf	5.081
	SRR3591708	Shoot apex	24.145
	SRR3591709	Stem	8.568
	SRR3591710	White floral bud	4.132
	SRR3591711	White flower	9.594
	SRR3591712	Green floral bud	4.657
	SRR3591713	Yellow flower	7.743
SRP173429	SRR8316895	Juvenile bud stage	6.150
	SRR8316896	Juvenile bud stage	8.289
	SRR8316897	Juvenile bud stage	3.355
	SRR8316894	Third green stage	2.411
	SRR8316900	Third green stage	4.909
	SRR8316901	Third green stage	4.758
	SRR8316898	Complete white stage	0.760
	SRR8316899	Complete white stage	4.773
	SRR8316903	Complete white stage	1.185
	SRR8316902	Silver flowering stage	2.313
	SRR8316904	Silver flowering stage	2.573
	SRR8316905	Silver flowering stage	1.407
	SRR8316906	Gold flowering stage	4.167
	SRR8316907	Gold flowering stage	3.046
	SRR8316908	Gold flowering stage	4.299
SRP132670	SRR6706286	Control	3.715
	SRR6706287	Light intensity 50%	3.165
	SRR6706288	Light intensity 20%	3.499
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.000
	CNS0095593	Slightly white alabastrum(diploid) 2	6.628
	CNS0095594	Slightly white alabastrum(diploid) 3	4.665
	CNS0095595	Whole white alabastrum(diploid) 2	3.682
	CNS0095596	Whole white alabastrum(diploid) 3	4.137
	CNS0095597	Whole white alabastrum(diploid) 4	4.959
	CNS0095598	Silvery flower (diploied) 1	8.261
	CNS0095599	Silvery flower (diploied) 2	6.185
	CNS0095600	Silvery flower (diploied) 3	3.907
	CNS0095601	Golden flower (diploid) 1	6.252
	CNS0095602	Golden flower (diploid) 2	4.623
	CNS0095603	Golden flower (diploid) 3	3.663
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.077
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.290
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.447
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.293
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.092
	CNS0095610	Silvery flower (tetraploid) 1	5.417
	CNS0095611	Silvery flower (tetraploid) 2	5.209
	CNS0095612	Silvery flower (tetraploid) 3	3.658
	CNS0095613	Golden flower (tetraploid) 1	3.738
	CNS0095614	Golden flower (tetraploid) 2	3.952
	CNS0095615	Golden flower (tetraploid) 3	2.459
CRA001975	CRR073297	Stem 1	5.878
	CRR073298	Stem 2	4.746
	CRR073299	Stem 3	5.205
	CRR073300	Leaf 1	2.417
	CRR073301	Leaf 2	2.952
	CRR073302	Leaf 3	2.004
	CRR073303	Juvenile bud 1	3.334
	CRR073304	Juvenile bud 2	0.533
	CRR073305	Juvenile bud 3	2.489
	CRR073306	Third green 1	0.069
	CRR073307	Third green 2	0.173
	CRR073308	Third green 3	0.138
	CRR073309	Second white 1	0.823
	CRR073310	Second white 2	0.592
	CRR073311	Second white 3	0.696
	CRR073312	Silver flowering 1	0.188
	CRR073313	Silver flowering 2	0.542
	CRR073314	Silver flowering 3	0.226
	CRR073315	Gold flowering 1	2.056
	CRR073316	Gold flowering 2	2.761
	CRR073317	Gold flowering 3	0.967
	CRR073318	Tawny withering 1	7.513
	CRR073319	Tawny withering 2	10.144
	CRR073320	Tawny withering 3	6.236