Detail information of GWHGAAZE008085


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007148845.11.40421E-08hypothetical protein PHAVU_005G019000g [Phaseolus vulgaris]
Swissprottr|Q9LRE6|DPOD1_ORYSJ0.000000003DNA polymerase delta catalytic subunit
trEMBLtr|V7BSA4|V7BSA4_PHAVU0.000000005DNA polymerase {ECO:0000256|RuleBase:RU000442}
TAIR10AT5G63960.10.000001DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6098874760989013+
GWHAAZE00000002mRNA6098874760989013+
GWHAAZE00000002exon6098874760988753+
GWHAAZE00000002exon6098883260989013+
GWHAAZE00000002CDS6098874760988753+
GWHAAZE00000002CDS6098883260989013+
Transcript Sequence

Network for GWHGAAZE008085

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02327POLD1 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.998
SRR3591706second leaf2.906
SRR3591707mature leaf1.559
SRR3591708Shoot apex10.373
SRR3591709Stem3.327
SRR3591710White floral bud0.864
SRR3591711White flower3.383
SRR3591712Green floral bud1.698
SRR3591713Yellow flower6.379
SRP173429 SRR8316895Juvenile bud stage 3.190
SRR8316896Juvenile bud stage 2.028
SRR8316897Juvenile bud stage 1.093
SRR8316894Third green stage 0.767
SRR8316900Third green stage 1.900
SRR8316901Third green stage 1.834
SRR8316898Complete white stage 0.326
SRR8316899Complete white stage 2.018
SRR8316903Complete white stage 0.412
SRR8316902Silver flowering stage0.093
SRR8316904Silver flowering stage2.135
SRR8316905Silver flowering stage0.964
SRR8316906Gold flowering stage 1.370
SRR8316907Gold flowering stage 0.546
SRR8316908Gold flowering stage 2.055
SRP132670SRR6706286Control0.889
SRR6706287Light intensity 50%2.844
SRR6706288Light intensity 20%2.703
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.142
CNS0095593Slightly white alabastrum(diploid) 21.237
CNS0095594Slightly white alabastrum(diploid) 31.366
CNS0095595Whole white alabastrum(diploid) 20.971
CNS0095596Whole white alabastrum(diploid) 30.213
CNS0095597Whole white alabastrum(diploid) 40.896
CNS0095598Silvery flower (diploied) 12.694
CNS0095599Silvery flower (diploied) 24.948
CNS0095600Silvery flower (diploied) 31.746
CNS0095601Golden flower (diploid) 10.918
CNS0095602Golden flower (diploid) 21.266
CNS0095603Golden flower (diploid) 32.387
CNS0095604Slightly white alabastrum(tetraploid) 12.944
CNS0095605Slightly white alabastrum(tetraploid) 20.905
CNS0095606Slightly white alabastrum(tetraploid) 33.350
CNS0095607Whole white alabastrum(tetraploid) 10.753
CNS0095608Whole white alabastrum(tetraploid) 20.262
CNS0095609Whole white alabastrum(tetraploid) 31.276
CNS0095610Silvery flower (tetraploid) 12.411
CNS0095611Silvery flower (tetraploid) 22.972
CNS0095612Silvery flower (tetraploid) 31.727
CNS0095613Golden flower (tetraploid) 10.812
CNS0095614Golden flower (tetraploid) 23.080
CNS0095615Golden flower (tetraploid) 31.193
CRA001975CRR073297Stem 13.778
CRR073298Stem 21.712
CRR073299Stem 34.690
CRR073300Leaf 11.827
CRR073301Leaf 20.995
CRR073302Leaf 31.759
CRR073303Juvenile bud 10.277
CRR073304Juvenile bud 20.204
CRR073305Juvenile bud 31.444
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.179
CRR073309Second white 10.050
CRR073310Second white 20.295
CRR073311Second white 30.701
CRR073312Silver flowering 10.087
CRR073313Silver flowering 20.298
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 21.934
CRR073317Gold flowering 30.874
CRR073318Tawny withering 12.908
CRR073319Tawny withering 22.783
CRR073320Tawny withering 32.808