Gene detail

Detail information of GWHGAAZE008067

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355148.1	1.4309E-102	PREDICTED: NAC domain-containing protein 78-like isoform X2 [Solanum tuberosum]
Swissprot	tr\|Q84K00\|NAC78_ARATH	2E-68	NAC domain-containing protein 78
trEMBL	tr\|A0A068U8B8\|A0A068U8B8_COFCA	8E-97	Coffea canephora DH200=94 genomic scaffold, scaffold_13 {ECO:0000313\|EMBL:CDP04701.1}
TAIR10	AT5G09330.4	1E-64	NAC domain containing protein 82

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60532784	60541741	+
GWHAAZE00000002	mRNA	60532784	60541741	+
GWHAAZE00000002	exon	60532784	60532940	+
GWHAAZE00000002	exon	60533959	60534233	+
GWHAAZE00000002	exon	60537177	60537539	+
GWHAAZE00000002	exon	60541349	60541741	+
GWHAAZE00000002	CDS	60532784	60532940	+
GWHAAZE00000002	CDS	60533959	60534233	+
GWHAAZE00000002	CDS	60537177	60537539	+
GWHAAZE00000002	CDS	60541349	60541741	+

Transcript Sequence
>GWHTAAZE008075 ATGGCGAGATTATCAACCCTCCCTCCGGGGTTTCGTTTCCATCCTACTGATGTTGAATTGGTTATGTACTACCTCAAGAGAAAGATATTGGGAAAGAAACTCTTCGAAGCCATTTCAGAGGTCAACATATACAAGTTCTCTCCATGGGATCTTTCAGATAAATCTTGCTTGAGAAGTAAGGATCGTGAGTGGTTCTTCTTTTGCCCTATAGAGAGGAAATATCCAAATGGGGGTAGAACAAAACGTGCTACTGAAACTGGACAATGGAAAGTCACAGGAAAAGATAGATATGTTCTTCACAATGAAAAAAAAGTTGGAACGGTTCGAACTTTGATTTTCTACACAGGTCGTGCACTGAAAGCAAATAGAACAGATTGGGTTATGCACGAATACAGTATGGAAGATAAGGATATGGCTAATGCTGGAGTTCAGGATGCATATGTGCTCTGTAAAGTCTTTGAGAAGAGTGGTCCTGGCCCTAAAAATGGTGCACAGTACGGAGCTCCGTTTAACGAGGAAGAATGGGATGAAGATGAAGAAACCTGTGCTGGATCTTCACCTGTTGATGGACTGGCCCCACCTGTGCTTACACTTCCTAATTTTCAGAACAGTTCTTATGTGACGAGCATGATTGATCCTGGAGGTGCAAGCAGCTGGTCTTTATCTGAACCAGGTCCATCTACTGCTGGACCTTCTTTTACTGAAGTGCCCGAGGGAGATGATGATCTTGCTTCCTTGTTGGATATGTTCACTGAGGATGACACTTTTCTTCGTACTTTGAACGGTGATGACGAGAAGCTCAAACATACCAATTGTGACAATAACATGGAAGAATACCGTATGTTTGATGGCTTAGGGGACCTTAGTGAAGGTGGATATAACTTCTCCAGCATTGACGAATCCTTCTTGGAGCTTAACGATCTCGACATTCCAATAGAACATCCTATTGATGAATCTAGTGGACCTGAACTATTATCAACTGATGCCTCAATTTTCTATCGTCATGTTAATTTGGATCATTTTTATCGTGGAGGTACTTTTTCAGGCTCTATTCAGAGTTATTCTGGGTTGAATCAGTCATTGGATCAATCCAACTATCCTGGGAATCATTTCCATGTGTTACAAAAGGTTGGTATTTGCAATATTCTTTTTTCTTCTTCTCTCTCAGAAGTCTCACTCTATGTATAA

Network for GWHGAAZE008067

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	8	132	7.40E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.143
	SRR3591706	second leaf	17.346
	SRR3591707	mature leaf	34.033
	SRR3591708	Shoot apex	27.009
	SRR3591709	Stem	64.877
	SRR3591710	White floral bud	41.404
	SRR3591711	White flower	54.032
	SRR3591712	Green floral bud	41.229
	SRR3591713	Yellow flower	35.855
SRP173429	SRR8316895	Juvenile bud stage	21.744
	SRR8316896	Juvenile bud stage	32.309
	SRR8316897	Juvenile bud stage	41.862
	SRR8316894	Third green stage	8.371
	SRR8316900	Third green stage	20.357
	SRR8316901	Third green stage	21.817
	SRR8316898	Complete white stage	9.030
	SRR8316899	Complete white stage	45.226
	SRR8316903	Complete white stage	16.292
	SRR8316902	Silver flowering stage	12.791
	SRR8316904	Silver flowering stage	17.648
	SRR8316905	Silver flowering stage	7.390
	SRR8316906	Gold flowering stage	24.656
	SRR8316907	Gold flowering stage	21.576
	SRR8316908	Gold flowering stage	30.395
SRP132670	SRR6706286	Control	11.817
	SRR6706287	Light intensity 50%	12.841
	SRR6706288	Light intensity 20%	15.191
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.095
	CNS0095593	Slightly white alabastrum(diploid) 2	19.960
	CNS0095594	Slightly white alabastrum(diploid) 3	15.857
	CNS0095595	Whole white alabastrum(diploid) 2	17.289
	CNS0095596	Whole white alabastrum(diploid) 3	10.229
	CNS0095597	Whole white alabastrum(diploid) 4	11.046
	CNS0095598	Silvery flower (diploied) 1	17.818
	CNS0095599	Silvery flower (diploied) 2	24.277
	CNS0095600	Silvery flower (diploied) 3	32.459
	CNS0095601	Golden flower (diploid) 1	26.631
	CNS0095602	Golden flower (diploid) 2	40.625
	CNS0095603	Golden flower (diploid) 3	36.283
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.473
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.415
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.304
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.308
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.653
	CNS0095610	Silvery flower (tetraploid) 1	22.115
	CNS0095611	Silvery flower (tetraploid) 2	22.264
	CNS0095612	Silvery flower (tetraploid) 3	17.892
	CNS0095613	Golden flower (tetraploid) 1	10.424
	CNS0095614	Golden flower (tetraploid) 2	16.764
	CNS0095615	Golden flower (tetraploid) 3	16.612
CRA001975	CRR073297	Stem 1	14.876
	CRR073298	Stem 2	14.953
	CRR073299	Stem 3	13.629
	CRR073300	Leaf 1	18.393
	CRR073301	Leaf 2	16.196
	CRR073302	Leaf 3	11.672
	CRR073303	Juvenile bud 1	15.581
	CRR073304	Juvenile bud 2	9.692
	CRR073305	Juvenile bud 3	16.339
	CRR073306	Third green 1	5.678
	CRR073307	Third green 2	4.923
	CRR073308	Third green 3	5.408
	CRR073309	Second white 1	4.723
	CRR073310	Second white 2	5.230
	CRR073311	Second white 3	7.285
	CRR073312	Silver flowering 1	6.097
	CRR073313	Silver flowering 2	4.329
	CRR073314	Silver flowering 3	4.556
	CRR073315	Gold flowering 1	12.554
	CRR073316	Gold flowering 2	21.643
	CRR073317	Gold flowering 3	6.515
	CRR073318	Tawny withering 1	29.396
	CRR073319	Tawny withering 2	24.963
	CRR073320	Tawny withering 3	29.142