Detail information of GWHGAAZE008059


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275031.19.64815E-42PREDICTED: leucine-rich repeat extensin-like protein 3 [Vitis vinifera]
trEMBLtr|A5AEG8|A5AEG8_VITVI4E-42Putative uncharacterized protein {ECO:0000313|EMBL:CAN71192.1}
TAIR10AT5G48920.14E-11tracheary element differentiation-related 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6044329260443930+
GWHAAZE00000002mRNA6044329260443930+
GWHAAZE00000002exon6044329260443930+
GWHAAZE00000002CDS6044329260443930+
Transcript Sequence

Network for GWHGAAZE008059

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.993
SRR3591706second leaf0.228
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.369
SRR3591709Stem12.273
SRR3591710White floral bud0.077
SRR3591711White flower0.000
SRR3591712Green floral bud0.361
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.064
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.098
SRR8316900Third green stage 0.445
SRR8316901Third green stage 1.158
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.073
SRR8316902Silver flowering stage0.230
SRR8316904Silver flowering stage0.169
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.096
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.327
SRR6706287Light intensity 50%0.182
SRR6706288Light intensity 20%0.529
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.104
CNS0095593Slightly white alabastrum(diploid) 20.036
CNS0095594Slightly white alabastrum(diploid) 30.372
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.142
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.254
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.039
CNS0095601Golden flower (diploid) 10.095
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.125
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.344
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.210
CNS0095610Silvery flower (tetraploid) 10.265
CNS0095611Silvery flower (tetraploid) 20.391
CNS0095612Silvery flower (tetraploid) 30.053
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.145
CRR073299Stem 30.034
CRR073300Leaf 10.361
CRR073301Leaf 20.281
CRR073302Leaf 30.362
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.215
CRR073305Juvenile bud 30.121
CRR073306Third green 10.000
CRR073307Third green 20.480
CRR073308Third green 30.008
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.810
CRR073319Tawny withering 21.470
CRR073320Tawny withering 32.303