Gene detail

Detail information of GWHGAAZE008055

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011007566.1	4.3531E-123	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X3 [Populus euphratica]
Swissprot	tr\|Q9LIH5\|C3H38_ARATH	2E-56	Zinc finger CCCH domain-containing protein 38
trEMBL	tr\|A0A067JZ23\|A0A067JZ23_JATCU	2E-121	Uncharacterized protein {ECO:0000313\|EMBL:KDP24789.1}
TAIR10	AT3G18640.1	9E-39	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60366683	60369918	-
GWHAAZE00000002	mRNA	60366683	60369918	-
GWHAAZE00000002	exon	60366683	60368597	-
GWHAAZE00000002	exon	60369569	60369918	-
GWHAAZE00000002	CDS	60369569	60369918	-
GWHAAZE00000002	CDS	60366683	60368597	-

Transcript Sequence
>GWHTAAZE008063 ATGAGTGGAAGTGGGCGGAAGCGCATTTCTAAATGGGATCTGCAGGACAAATCTCAAAAGCCTTTGTCAGTAGAAGATTTTCAACACAATGCTGTGCCTGGGGAAGCGGGCAAGTTAGTTCAAAATAGAGAATCAGAGTTGGGTGGTAGTAATAGTGATCCAAAGTGGTACGGTGCAGAGGCAAACAATGAACATAGTGGAGAAGTTTTAGATGCCTCAATGCCATGGGATCCAGATGTAAAAATGTCTCCAGATCTAGACGATTGGAAGCAGAAAAAACGTAATTATTCCCCCAAAAGCGGTTTGGGAAGATTAAACAGGTCCACTACATGTCTTAAAATTATAGACATGGATCCAAAATCAAATGATAGAAGTAGTGTGCCTCAGCCCTGTAAAGATTTTGCTGAAGGAAGATGTAGGAGAGGTGATCATTGTCCTTATCTTCACCAAAATTCCGAGGATAGGAGATATTCTGGAGGTGGGCTGATGACAGGTCGGCCTAGGAGGGATGATGATGCTTCTAGATACACGGTTTCTGATGATTCGAGGGAGCAGTACCCACCGCAGATTGGAAGATCTAATAATAATAATATTTGTAATAACTTCTTAAAAGGCAGGTGTTTTAGGGGTGAATCATGCAGATATTCTCATCATAGTATCGTTTCTGATGGTGGGATTGTTAAAGGGTCTTCCGATGAATCCATCAAAGCAAGGGAAAATGACAGAAGGAGCAGAATGAATAACGAACCTCCTCGTAGAAGTGGAGGCGACATTCCATGCAAATTCTTTGCTTCAGGAAATTGTCGCAATGGGAAACTTTGCCGTTTTTCCCATCATGGGCTGACACATGACAGTTCTGATGACATGTCACGAGATGATTGGAGGAGACGTGGCAATAATTCGAGTAATGTGGACCAAGTGAGGGAACCTAACCTCAACTCAGACAACAGGTCTTGGGCTCACCCAATGGAGAATGATAGAGCAAAAGAAAGGGATGAAAGTGAATATCTTCAATTGAGGGAAGAGAACAACACTGGTGCTGGAATTGAAGTTTCCCAATCAAAGGGTGCTGAAAATTGGGACGGTGATATGGAGATTTCTCCACCTCAAGATTATAGATTGCCCTCTTCCAACAGTATTGTTGTTAAAGAAGATCATAATGAAATTGCTAAGCATCTCAATGTTGAAGCTGTGCAACCATTGATGTCTCGACATTCCTCTTTCCAAAAGAACCTCAGTTATAGTGCAGTGTCGGGCATTGATCTAAATTCCTCCGTTAGTGTCCCACCAAGACAAACCTTGGATCCAAACCATCAAAGTTCAAGTACATTCGGCTTAAATGCAGTTGGACAAAATCAGCAGTCACTTGCAGCACCATATGCTCGAACTGAAAAAATTAATCCTAATATGCAGAGTCAACAGCTGTTACTGGACGGTAATAATAGATCATTTAACACAGTAACATCTGAAATTCCAAGCAGTCAAAACACAGTAAGCAAAGAGCAGCTCTCTCAACTTACAAATTTGTCGGCCTCTTTGGCTCAATTATTTGGATCCGGGCAACAACTCCCCCAACTCTATGCTGCTCTGAATGGTTCAAATTCTGTCGGTCAGCCAAATCAGGCTATTGTATCACAAAATCAATATGATCCTATAAGTGATAGTGTCGATCTGAATAAACCCAATACCAGTAGCCAACCTCCTGCAGTTTTTGCACCAAAGTCTGAGGAGCAGAAACCAGAAATACCATCGCAAATATTAGAAACCAGTGTCGAACTCAATAACAAGAGTCACCAGCTGAACAAGACAACAGATCAAGCTGCGGAAAAAGTTGAAATGGTGGACAATGAAAACAAGAAAGGAAAAGATGGTGGACCTGCAGAGAAGATAGATGGAGATAGTGGCGGTGATGGTAATAATGGTAGGGCCGACGAGGGCAAGAACGGAAAGGGTATGCGTGCATTTAAATTTGCGCTCGTGGAGTTTGTGAAGGAGCTTCTAAAACCAACGTGGAAGGAAGGTCAACTTAGCAAAGAGGATCACAAGACTATAGTGAAGAAAGTGGTTGACAAGGTGACTAGTAGCATCCAAGGAGCTCATATACCTCAATCACAAGAAAAGATTGACAACTATCTATCATCTTCGAAACCAAAGCTCTCCAAACTTGTACAGGTTTGTTTTATTTCTTTTGCCTTTGTCTTTTTAACTGAGTGCAGGTCTGCCCACTCGGTGCAGCAATTGGAAGATGGCAACAAAACGCATTGA

Network for GWHGAAZE008055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	130	149	0.00021
PF14608.7	zf-CCCH_2	198	217	0.36
PF14608.7	zf-CCCH_2	259	278	0.00096

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.574
	SRR3591706	second leaf	10.116
	SRR3591707	mature leaf	11.164
	SRR3591708	Shoot apex	15.883
	SRR3591709	Stem	13.884
	SRR3591710	White floral bud	16.010
	SRR3591711	White flower	15.326
	SRR3591712	Green floral bud	15.574
	SRR3591713	Yellow flower	15.109
SRP173429	SRR8316895	Juvenile bud stage	10.492
	SRR8316896	Juvenile bud stage	14.016
	SRR8316897	Juvenile bud stage	8.362
	SRR8316894	Third green stage	5.798
	SRR8316900	Third green stage	11.691
	SRR8316901	Third green stage	13.546
	SRR8316898	Complete white stage	7.469
	SRR8316899	Complete white stage	21.298
	SRR8316903	Complete white stage	12.052
	SRR8316902	Silver flowering stage	7.055
	SRR8316904	Silver flowering stage	10.624
	SRR8316905	Silver flowering stage	4.942
	SRR8316906	Gold flowering stage	16.154
	SRR8316907	Gold flowering stage	15.076
	SRR8316908	Gold flowering stage	15.803
SRP132670	SRR6706286	Control	13.796
	SRR6706287	Light intensity 50%	15.358
	SRR6706288	Light intensity 20%	16.356
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.143
	CNS0095593	Slightly white alabastrum(diploid) 2	9.996
	CNS0095594	Slightly white alabastrum(diploid) 3	9.130
	CNS0095595	Whole white alabastrum(diploid) 2	8.463
	CNS0095596	Whole white alabastrum(diploid) 3	6.640
	CNS0095597	Whole white alabastrum(diploid) 4	8.151
	CNS0095598	Silvery flower (diploied) 1	13.443
	CNS0095599	Silvery flower (diploied) 2	12.608
	CNS0095600	Silvery flower (diploied) 3	15.640
	CNS0095601	Golden flower (diploid) 1	12.619
	CNS0095602	Golden flower (diploid) 2	17.147
	CNS0095603	Golden flower (diploid) 3	16.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.131
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.290
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.340
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.641
	CNS0095610	Silvery flower (tetraploid) 1	13.431
	CNS0095611	Silvery flower (tetraploid) 2	12.529
	CNS0095612	Silvery flower (tetraploid) 3	13.211
	CNS0095613	Golden flower (tetraploid) 1	8.271
	CNS0095614	Golden flower (tetraploid) 2	10.413
	CNS0095615	Golden flower (tetraploid) 3	12.288
CRA001975	CRR073297	Stem 1	16.449
	CRR073298	Stem 2	16.159
	CRR073299	Stem 3	12.032
	CRR073300	Leaf 1	16.093
	CRR073301	Leaf 2	12.885
	CRR073302	Leaf 3	10.033
	CRR073303	Juvenile bud 1	9.356
	CRR073304	Juvenile bud 2	11.729
	CRR073305	Juvenile bud 3	12.947
	CRR073306	Third green 1	8.288
	CRR073307	Third green 2	7.061
	CRR073308	Third green 3	9.485
	CRR073309	Second white 1	5.467
	CRR073310	Second white 2	9.796
	CRR073311	Second white 3	8.591
	CRR073312	Silver flowering 1	6.640
	CRR073313	Silver flowering 2	4.405
	CRR073314	Silver flowering 3	5.206
	CRR073315	Gold flowering 1	7.073
	CRR073316	Gold flowering 2	11.685
	CRR073317	Gold flowering 3	4.512
	CRR073318	Tawny withering 1	13.382
	CRR073319	Tawny withering 2	12.138
	CRR073320	Tawny withering 3	15.981