Gene detail

Detail information of GWHGAAZE008021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655357.1	0	PREDICTED: polyadenylation and cleavage factor homolog 4 [Vitis vinifera]
Swissprot	tr\|Q0WPF2\|PCFS4_ARATH	0	Polyadenylation and cleavage factor homolog 4 {ECO:0000305}
trEMBL	tr\|F6H7L4\|F6H7L4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48172.1}
TAIR10	AT4G04885.1	5E-95	PCF11P-similar protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	59611036	59619544	+
GWHAAZE00000002	mRNA	59611036	59619544	+
GWHAAZE00000002	exon	59611036	59611455	+
GWHAAZE00000002	exon	59613682	59613783	+
GWHAAZE00000002	exon	59613875	59614141	+
GWHAAZE00000002	exon	59616414	59617163	+
GWHAAZE00000002	exon	59617960	59618271	+
GWHAAZE00000002	exon	59618413	59618895	+
GWHAAZE00000002	exon	59619026	59619544	+
GWHAAZE00000002	five_prime_UTR	59611036	59611086	+
GWHAAZE00000002	CDS	59611087	59611455	+
GWHAAZE00000002	CDS	59613682	59613783	+
GWHAAZE00000002	CDS	59613875	59614141	+
GWHAAZE00000002	CDS	59616414	59617163	+
GWHAAZE00000002	CDS	59617960	59618271	+
GWHAAZE00000002	CDS	59618413	59618895	+
GWHAAZE00000002	CDS	59619026	59619544	+

Transcript Sequence
>GWHTAAZE008029 AGTGCTGGTTCAAAACCCTAACCCTTCCTCACCACCACTGTAACCCCATCCATGGAGGAACAACAGAGGTATGTATCCATTCGCGAAAACCCTAGAAACATCAGTTTAACAACAAACTTCAACAATAACAAGCCAATGTTGTCGAACGACGCCGTTCTGGTTCAGAAATCTTCTATGACTCCAATTGTGGATCGATTCAAGGCCATGTTGAAGGAGCGAGATGACGATGTTAGGGTTTTGGCCGATGGCGATGTCCCACCGCCACCGACTACCGATGAAATTGTGCATCTCTATGAATTGGTTTTGTCGGAACTCACTTTCAATTCGAAGCCTATTATTACTGATCTTACTATAATTGCCGGAGAGCAGAGAGAACATGGAGAGGGCATTGCTGATGCAATTTGTGCTCGGATTGTTGAGGTACCAGTTGAGCAAAAATTGCCTTCTTTGTATCTTCTGGACAGTATTGTGAAGAACATTGGCAGGGAATATGTGAGACACTTTTCGGGTCGTTTGCCTGAGGTTTTCTGCGTGGCATATAGGCAAGTCCACCCTAACATGCATCCTTCTATGCGCCACCTATTTGGTACCTGGTCAACTGTATTTCCACCTTCAGTTCTTCACAAGATTGAGACCCAGTTGCAATTTTCTCCATCACTCAACCTCCAATCTTCTGGTTCGACTCCTTTGGGGGCTGCTTCCGAATCTCCACGACCAACTCATGGTATACATGTCAATCCAAAATATTTGGAAGCAAGGCGTCAGTTGGAACATTCAGCTGGAGATGGTAACATTCAGCATACAAGAGGAATGTCTTCATCCTTGAAGATACATGGGAAACCTACCATTGGATATGACAGATACGATTCTGATAATCAGATTGAGGTCCACAGAGTGAGGTCACCTGGTCTTGCAGGCACTACATCTTTTTTGCCCGAGGCTGAGAAGTTGCCCCTCTCATCAACAGCTAGAATTGGAAGGCCCCCTTCTCCTTTTGGAATTGGCCATGCCAGGACATTATCACCTTCAGTTGATGAATTTGTAATGGATGATTCTTCTGGTAGGATTGTGGAAAGGGCCTCACCATCTCATCCTCGATTTGACTATCGGAGAGTTCAGTTGACTGACGATACTAATCAACGATTTGAAATGTCTGCATATAGCTCTAGTAATGGAGTTGAGCTTCAACGACCTAGAGCTTTAATTGATGCTTATGGAATGGATCAAGGGAAAAGAACATTTAACAGTAAGACTCCAAAGGTTGAAAATGTGGATATAAATGGCATAGACAGCAAGGCGGCTATGCCGACGTGGCAGAATACTGAAGAAGAGGAGTTTGATTGGGAAGATATGAGCCCAACTCTTGGAAACCGTAGTGTGACTAGTGACGTAAGCTTTAGGATGGGGCCCGGATTTGGGACCCACCACCATCCACCTTCAGAGAATGATTTTAGGAGAGGCAATTGGTCTAATCAGTCACAACATTCTGTGGGTAATGGTTCTCCCGTTGTTCCTGAAGATGCAGTTCCTTCCATCAATTCTGGCCGTGGATTGATTGATAAGATATCAGGATTACGCCATGATACAACACAGTTTCCTATTTCTCATCGCCCGGAATCCTGGAACTTGCCACCTAATCTCCCCGAGTCTTCACAACAGCATTTTAATGCGAAAAGAAGTGGAGGCAATTTCCAAATGCCAATCTTGGCTGTATCATCAGATGGTGAACAAAAGCCTCCTCTATCTGGCAGTTTTATCAGTTCTTCAACCATACAATCTAATATAAGTTCTTCAAGTCACGAAATACTGAATCCTGAGGTTCCAGCAGCATCAACAGGCACTTGGCCTCCTTTGGGTAGTATTGAAAACAAAGCAGCAATGAGCAACCTGCCTCAATTTATTCATCAGCAAAGCCAAGCCCAAATCCCTATGTTGCAACCTCAATCCCGAATGCCCCATGAGGTTCGACAGAACTTTGTTCCGAGCCCTGCCCTTTCGACCCCGTCTCATTTATTTGTACCACCACCATTTAATCATAATTACATCCCGCAAGGGCACGGTCCCTCTACAAGTGCTCTCATGTCTAATTCACTTCCCTCTATGCAATCATCCATGCGAATGCCTAATATACCAAACCCCTCCTTGCATTTACCAAGTGTACTTTTGCCTCCTCTGCCTTCGGGGCCCCCTCCTACATCATCGCAATTGATTTCTGGCCCCCAAAATCTTGGTCTTACGGCCCCTAACCCTCCAACTGGTGGTGCATTTTCGGGTTTGATTAGCTCTCTCATGTCCCAAGGTCTGATCTCGTTCAAGGAACAAGCTGCGACGCAGGATTCCGTGGGACTTGAGTTTAATCCCGACCATCTTAAGGTTCGTCACGAGTCTGCTATAACTGCTTTGTACGCTGATCTCCCCAGACAATGCACAACGTGTGGACTTCGATTCAAATGCCAAGAGGAACACCGTAGTCATATGGACTGGCATGTCACCAAGAACCGTATATCAAAAAACCGTAAGCAGAAACCTTCCCGTAAATGGTATGTCAGTGTTAATATGTGGCTCAGTACTGCAGAGGCGTTGGGTAACGATGCGGTTCCCGGGTTTCTACAACCCACAGAGAATGTTGTGGAGAAAAAAGACGACGAAGAAATGGCTGTTCCTGCTGATGAAGATCAGAATGTTTGTGCTCTTTGTGGTGAGCCTTTTGATGATTTCTATAGTGATGAGACTGAAGAGTGGATGTACAAGGGGGCTGTCTACATGAACGCACCAAACGGGTCAACATCGGGCATGGATAGGTCTCAACTGGGACCTATAGTGCATGCTAAGTGCAGGTCTGGGTCTACCTGA

Network for GWHGAAZE008021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04818.14	CID	86	192	8.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14400	PCF11	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.422
	SRR3591706	second leaf	11.335
	SRR3591707	mature leaf	15.180
	SRR3591708	Shoot apex	17.814
	SRR3591709	Stem	17.967
	SRR3591710	White floral bud	16.843
	SRR3591711	White flower	21.408
	SRR3591712	Green floral bud	16.279
	SRR3591713	Yellow flower	15.377
SRP173429	SRR8316895	Juvenile bud stage	9.189
	SRR8316896	Juvenile bud stage	11.734
	SRR8316897	Juvenile bud stage	6.406
	SRR8316894	Third green stage	6.025
	SRR8316900	Third green stage	11.969
	SRR8316901	Third green stage	12.743
	SRR8316898	Complete white stage	2.813
	SRR8316899	Complete white stage	13.297
	SRR8316903	Complete white stage	8.826
	SRR8316902	Silver flowering stage	6.322
	SRR8316904	Silver flowering stage	10.376
	SRR8316905	Silver flowering stage	4.173
	SRR8316906	Gold flowering stage	11.814
	SRR8316907	Gold flowering stage	12.737
	SRR8316908	Gold flowering stage	13.894
SRP132670	SRR6706286	Control	13.451
	SRR6706287	Light intensity 50%	14.116
	SRR6706288	Light intensity 20%	13.727
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.893
	CNS0095593	Slightly white alabastrum(diploid) 2	10.718
	CNS0095594	Slightly white alabastrum(diploid) 3	9.634
	CNS0095595	Whole white alabastrum(diploid) 2	7.958
	CNS0095596	Whole white alabastrum(diploid) 3	6.878
	CNS0095597	Whole white alabastrum(diploid) 4	7.303
	CNS0095598	Silvery flower (diploied) 1	12.824
	CNS0095599	Silvery flower (diploied) 2	10.570
	CNS0095600	Silvery flower (diploied) 3	17.636
	CNS0095601	Golden flower (diploid) 1	13.007
	CNS0095602	Golden flower (diploid) 2	18.333
	CNS0095603	Golden flower (diploid) 3	17.594
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.694
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.829
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.941
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.079
	CNS0095610	Silvery flower (tetraploid) 1	19.444
	CNS0095611	Silvery flower (tetraploid) 2	16.778
	CNS0095612	Silvery flower (tetraploid) 3	16.033
	CNS0095613	Golden flower (tetraploid) 1	11.559
	CNS0095614	Golden flower (tetraploid) 2	16.176
	CNS0095615	Golden flower (tetraploid) 3	17.636
CRA001975	CRR073297	Stem 1	20.069
	CRR073298	Stem 2	17.751
	CRR073299	Stem 3	15.850
	CRR073300	Leaf 1	20.268
	CRR073301	Leaf 2	17.687
	CRR073302	Leaf 3	10.130
	CRR073303	Juvenile bud 1	11.515
	CRR073304	Juvenile bud 2	8.468
	CRR073305	Juvenile bud 3	17.425
	CRR073306	Third green 1	7.387
	CRR073307	Third green 2	5.603
	CRR073308	Third green 3	7.422
	CRR073309	Second white 1	8.132
	CRR073310	Second white 2	8.783
	CRR073311	Second white 3	11.233
	CRR073312	Silver flowering 1	9.831
	CRR073313	Silver flowering 2	11.543
	CRR073314	Silver flowering 3	9.666
	CRR073315	Gold flowering 1	7.774
	CRR073316	Gold flowering 2	12.270
	CRR073317	Gold flowering 3	7.892
	CRR073318	Tawny withering 1	12.504
	CRR073319	Tawny withering 2	10.034
	CRR073320	Tawny withering 3	11.871