Gene detail

Detail information of GWHGAAZE007982

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274695.1	3.9233E-177	PREDICTED: spermidine hydroxycinnamoyl transferase-like [Vitis vinifera]
Swissprot	tr\|O64470\|SHT_ARATH	1E-145	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|H9DUD7\|H9DUD7_CAMSI	2E-173	Putative hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase {ECO:0000313\|EMBL:AFD64619.1}
TAIR10	AT2G19070.1	9E-120	spermidine hydroxycinnamoyl transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	58515945	58517249	+
GWHAAZE00000002	mRNA	58515945	58517249	+
GWHAAZE00000002	exon	58515945	58517249	+
GWHAAZE00000002	CDS	58515945	58517249	+

Transcript Sequence
>GWHTAAZE007990 ATGAAACCAACAGAACACACCCCGAATGGCATAATGAGTTTATCAGAATTTGATCAAGCTGGTGTCATAACTCATGTACCTGTAGTCTATTTTTATCAAGGCCCTATTGACTTTGACTCTTTCATTGTTACCCTCAAACAATCACTAACCAAAGTATTGGTGCCATTCTATCCACTTGCCGGCCGCCTACGCGATATAGGTGGAGGTCGTTTTGAGGTTGACTGTAACCCCATTGGGGCTCAGTTTCTTGTGGCCGAATCAGAAGCCACCATAGAATACTTTGGTGACTTCCATCCAACTCCAGAACTTCGAGCCCTAGTCCCACTAGTGGATTCCAAAGCGCCACTTCACGAACAACCATTGCTTCTCGTGCAAGTCACAAAGTTGAGTTGCGGCGGAATTTGTTTAGGCACGGCGATTTCACATGTCATGGCGGACGGACCTAGTGGATCTCACTTCATTACTGAGTGGGCAAGAATTGCACGTGGTGAGCAATTGAGTAACCCACCGTTTCTCGATCGAACAATTCTTCAAGTCAAAGATCCTTTGTTGCCGCCAAGCTTTGATCACCCAGAGTATAGTCCTCCGCCACTATTAGTGGGGAGATCAGACGCGATGGAGGAAATAACGAAGAAGACTGTGTTGGTCATCCTAAAGTTTACGAAAAAAGAGGTTGACAAACTAAAGGAAAAGGCTAACCATGGTCGAAATAATGTTAATGCGCGTAGTTATAGTAGTTTCGAAGCTATTGCTGGCCATATGTGGAGGTGCACATCCAAGGCACGTCGACATGAGAGTCAACAGCCAACAAGGCTATTTTTTCCTATGGACGTCAGAAACCGGATGGAACCGCCATTACCACAATTCTATTTCGGTAATGCAATATGTCGAGCAGCAACAACAAGCACCTCAGGAGAGTTACTATCAAAACCACTTAGCTATGCTTCGAGTAAGATACGAGAAGAAATAGATAAGGCGACCGACGAGTACCTGAGATCATCGATGCGTTTGTTAAAGAATCTTCCGGATATATCTGAATACCGTAATTTTCATTCACCTGGTTGCACCCAAGGGGCTTTTCATGGGAACCCGAATATGGCGGTCAATAGTTGGACAAGAATACCCATATATGGCGCTGATTTTGGGTGGGGAAAGGAAATATATATCGGACCAGCTGCAGTTGGTTCGGAGGGAAAATTCCTGATCAGCCTTAGTTCTCAAGAAGAAGACTCCTTTGTCATTGTGGTGCACTTGCAAGTAGCGCACGTGGAAGATTTTAAGAAGTTTTTCTATGAAGATATCTAA

Network for GWHGAAZE007982

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02458.16	Transferase	2	432	8.60E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13065	E2.3.1.133, HCT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.386
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.008
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	5.955
	SRR3591710	White floral bud	1.631
	SRR3591711	White flower	9.451
	SRR3591712	Green floral bud	1.036
	SRR3591713	Yellow flower	0.703
SRP173429	SRR8316895	Juvenile bud stage	0.114
	SRR8316896	Juvenile bud stage	0.206
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.026
	SRR8316900	Third green stage	0.030
	SRR8316901	Third green stage	0.106
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	0.443
	SRR8316903	Complete white stage	0.639
	SRR8316902	Silver flowering stage	0.237
	SRR8316904	Silver flowering stage	1.011
	SRR8316905	Silver flowering stage	0.233
	SRR8316906	Gold flowering stage	3.592
	SRR8316907	Gold flowering stage	2.577
	SRR8316908	Gold flowering stage	1.542
SRP132670	SRR6706286	Control	0.097
	SRR6706287	Light intensity 50%	0.111
	SRR6706288	Light intensity 20%	0.010
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.101
	CNS0095593	Slightly white alabastrum(diploid) 2	0.039
	CNS0095594	Slightly white alabastrum(diploid) 3	0.154
	CNS0095595	Whole white alabastrum(diploid) 2	0.064
	CNS0095596	Whole white alabastrum(diploid) 3	0.033
	CNS0095597	Whole white alabastrum(diploid) 4	0.050
	CNS0095598	Silvery flower (diploied) 1	0.525
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.622
	CNS0095601	Golden flower (diploid) 1	0.016
	CNS0095602	Golden flower (diploid) 2	1.232
	CNS0095603	Golden flower (diploid) 3	1.333
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.008
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.813
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.917
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.837
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.247
	CNS0095610	Silvery flower (tetraploid) 1	1.828
	CNS0095611	Silvery flower (tetraploid) 2	1.142
	CNS0095612	Silvery flower (tetraploid) 3	0.643
	CNS0095613	Golden flower (tetraploid) 1	0.603
	CNS0095614	Golden flower (tetraploid) 2	1.426
	CNS0095615	Golden flower (tetraploid) 3	0.761
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.061
	CRR073299	Stem 3	0.021
	CRR073300	Leaf 1	0.036
	CRR073301	Leaf 2	0.031
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.058
	CRR073304	Juvenile bud 2	0.236
	CRR073305	Juvenile bud 3	0.032
	CRR073306	Third green 1	0.502
	CRR073307	Third green 2	1.546
	CRR073308	Third green 3	1.749
	CRR073309	Second white 1	3.836
	CRR073310	Second white 2	1.894
	CRR073311	Second white 3	1.189
	CRR073312	Silver flowering 1	1.634
	CRR073313	Silver flowering 2	1.836
	CRR073314	Silver flowering 3	0.938
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.027
	CRR073318	Tawny withering 1	20.851
	CRR073319	Tawny withering 2	16.306
	CRR073320	Tawny withering 3	4.533