Gene detail

Detail information of GWHGAAZE007981

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009607294.1	PREDICTED: ABC transporter C family member 10-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LYS2\|AB10C_ARATH	ABC transporter C family member 10
trEMBL	tr\|B9RIN7\|B9RIN7_RICCO	Multidrug resistance-associated protein 1, 3 (Mrp1, 3), abc-transoprter, putative {ECO:0000313\|EMBL:EEF49009.1}
TAIR10	AT3G59140.1	multidrug resistance-associated protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	58493366	58506762	+
GWHAAZE00000002	mRNA	58493366	58506762	+
GWHAAZE00000002	exon	58493366	58493456	+
GWHAAZE00000002	exon	58493688	58493845	+
GWHAAZE00000002	exon	58495526	58495693	+
GWHAAZE00000002	exon	58496814	58497134	+
GWHAAZE00000002	exon	58499407	58499493	+
GWHAAZE00000002	exon	58500215	58500805	+
GWHAAZE00000002	exon	58501086	58501250	+
GWHAAZE00000002	exon	58501654	58501948	+
GWHAAZE00000002	exon	58502417	58502586	+
GWHAAZE00000002	exon	58503849	58504208	+
GWHAAZE00000002	exon	58504463	58504526	+
GWHAAZE00000002	exon	58505834	58506073	+
GWHAAZE00000002	exon	58506650	58506762	+
GWHAAZE00000002	CDS	58493366	58493456	+
GWHAAZE00000002	CDS	58493688	58493845	+
GWHAAZE00000002	CDS	58495526	58495693	+
GWHAAZE00000002	CDS	58496814	58497134	+
GWHAAZE00000002	CDS	58499407	58499493	+
GWHAAZE00000002	CDS	58500215	58500805	+
GWHAAZE00000002	CDS	58501086	58501250	+
GWHAAZE00000002	CDS	58501654	58501948	+
GWHAAZE00000002	CDS	58502417	58502586	+
GWHAAZE00000002	CDS	58503849	58504208	+
GWHAAZE00000002	CDS	58504463	58504526	+
GWHAAZE00000002	CDS	58505834	58506073	+
GWHAAZE00000002	CDS	58506650	58506762	+

Transcript Sequence
>GWHTAAZE007989 GTGGTAATGGGAAGTTTCGTCACTCCACTGGCACAAGCCGGTGTTTTAAGTAAAATGTCGTTTTGGTGGTTGAATCCGTTGATGACCAGAGGTCCTCTCTTTCTTGAAGCTTTCGTCAAGGTTGCTGAGGGTAAGCCGAGTTTCAAAAATGAGGGTTATATATTGGCTATATCCCTTTTCTTTTCAAAGATTTTGGAGTCCTTGTCACAAAGGCAATGGTTCTTTAAAGGCCGAATTATTGGTCTAAAATCTGCCTATTTTTCGTGGGATGATAACTTGGTGGATCCCACACTTAGGAACATTGATCTAAAGGTTAAAGTTGGCGAAAAGGTTGCTATTTGTGGAGAGGTGGGCTCAGGGAAGTCGAGCCTTTTAGCTGCAATTCTTGGAGAGCTTTCAGCTGATATAGAAGGAGTTATCGAGGTGTACGGAGATGTTGCATACGTTTCTCAGTCAGCATGGATTCAGACAGGAACTATACGAGAAAATATTTTGTTTGGCTCGACCTTGGATAATGAGAGATATCAAGAAACACTCGACAAGTGTTCGTTGACAAAGGACCTCGAGCTGCTACCTCACGGCGACCTCACTGAAATAGGGGAAAGAGGAGTTAATCTCAGTGGCGGCCAGAAGCAGAGGATTCAACTTGCTCGTGCACTATATCGCAATGCTGATATTTATCTTTTGGATGATCCCTTCAGTGCTGTTGACGCACAAACTGCTACAAGCCTATTCAATGAATACATAATGGGAGCCCTTGCTGGGAAGACAGTCATACTAGTGACGCATCAAGTTGATTTCCTTCCTGCATTTGATTATGTTCTATTGATGGCAGGTGGGGAAATCCTACATGCTGCTCCATATCATCAATTGCTTGCCTCGAGCCAAGAATTTCAGGACCTAGTGGACGCACACAAAGAGACCGCTGGTTCAAAAAACACAGCAGATGTTACTCCTACTCGAAAGGGTAAAACTTTGAAGGGAGCTATGAGTAAGACTTCTATTAATGAAGAGACCACTATAACATCCAAAGGCGACCAGTTGATTAAGGAAGAAGAGAAGGAATTAGGAGACATAGGGTTCAAGCCTTACATGCAATACTTAAACCAGAACAAAGGCTACTTTGTGTTCTCCTTGATTATTATCTCCCAACTTTCTTTTGTGACTGGTCAGATATTGCAGAACTCATGGATGGCAGCAAATGTGGACAAGCATAACGTCAGCATGTTGAAATTAATCATGGTTTACTTCGTGATTGGATTTATATCAATACTGTTTCTTCTTATTAGATCTTTTGGGACAGTTGTTTTGGGTATGCAATCATCGAAATCAATGTTCTTGCAACTTTTAAGGTCTCTTTTTGGTGCACCCATGTCGTTTTATGACTCCACGCCTCTGGGAAGGATATTAAGCCGCGTCTCGTCTGATTTGAGTATTGTGGATCTTGACATTCCATTTACTTTGATCTCTGCTGTTACGAGCACCATAATTGCTTATTCGAGTATTGGAGTTCTAGCTGTTGTTACATGGCAGATCTTGTTTGTAGCTATACCAATGGTTTTTCTGGCAATTTGCCTACAGAGATACTACCTTTCCTCTGCGAAAGAGGTTATGCGGATTAACGGCACGAGCAAATCGTTGGTAGCAAGTCATATAGCTGAATCCATAGCAGGATCCGTGACAATAAGAGCTTTTGAGGAGCAAGACCGATTCTTTGAGAAGAACCTTGACCTCATTGACAAAAATGCCAGTCCGTTCTTCCACAGTTTTGCAGCCAATGAGTGGTTGATTCTACGGATCGAAATACTTGCTGCCACCATTCTCGCCTCCTTGGCACTCTGCATGGTTTTGCTACCTCATAAACTTCTCAGCTCTGGATTTGTTGGAATGGCTTTGTCGTATGGACTTTCACTAGGCACAACCCTTGTTATATGCATTCGAGATCAGTGCGCCTTGGCAAATAGCATTATTTCTGTAGAAAGGCTTAGCCAATACACGCATATTCCAAGTGAAGCTCCTCAAGTTATTGAAGAGAATCGTCCCCCATTTATGGGATGGAACAAAAGATTAACGTTGATGCATGGATCGAAATTGAAACAGATCAAATATAGATCGGATGCACCACTTGTTCTTGATGGAATAAGTTGCAAATTTGAAGGAGGGCACAAGGTTGGGATAGTTGGAAGAACTGGGAGTGGGAAGACTACTCTTATAGCTGCTTTATTTCGGCTTGTGGAACCATTTGGAGGGAGGATTGTAATTGATGGAATTGACATTTCTACACTTGGACTACATGATTTGAGGTCAAGTTTTGGGGTACTCCCACAAGATCCTACTCTTTTCAATGGATCTGTTAGATACAATTTGGATCCTTTATCTCAACACACCGACGGCAAAATATGGGAGGTTCTTGGCAAGTGTCAACTGGCAGAGGCTGTTACGGAGAAAAAAGATGGTCTAGACTCTCTAGTTGCAGAAGACGGGTCGAACTGGAGCATGGGGCAGAGGCAATTGTTTTGTTTGGGGAGGGCTCTATTGAGGAGAAGCAAGATATTGGTGCTTGATGAAGCCACTGCTTCTATTGATAATGCCACTGATCTTATCTTGCAGAAAACTATTCGGAACGAATTTGCTGATTGTAGTGTCATCACTGTGGCTCATAGGATACCAACTGTGATGGATTGTAACATGATTCTGGCAATCAGCAACGGAAAACTAGTGGAGTATGATGAACCAATGAACTTAATGAAGAGAGAAGGCTCATTGTTCGGGCAGCTTGTCAAAGAATACTGGTCTCATTATCAATCTGCATATTCACATTAA

Network for GWHGAAZE007981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	98	233	1.60E-21
PF00664.24	ABC_membrane	378	624	1.30E-28
PF00005.28	ABC_tran	711	859	3.20E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.040
	SRR3591707	mature leaf	0.057
	SRR3591708	Shoot apex	0.157
	SRR3591709	Stem	0.159
	SRR3591710	White floral bud	0.627
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.068
	SRR3591713	Yellow flower	0.084
SRP173429	SRR8316895	Juvenile bud stage	12.010
	SRR8316896	Juvenile bud stage	4.749
	SRR8316897	Juvenile bud stage	2.562
	SRR8316894	Third green stage	0.353
	SRR8316900	Third green stage	0.026
	SRR8316901	Third green stage	0.061
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.044
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.008
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.154
SRP132670	SRR6706286	Control	0.072
	SRR6706287	Light intensity 50%	0.059
	SRR6706288	Light intensity 20%	0.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.145
	CNS0095593	Slightly white alabastrum(diploid) 2	0.137
	CNS0095594	Slightly white alabastrum(diploid) 3	0.371
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.022
	CNS0095597	Whole white alabastrum(diploid) 4	0.025
	CNS0095598	Silvery flower (diploied) 1	0.033
	CNS0095599	Silvery flower (diploied) 2	0.008
	CNS0095600	Silvery flower (diploied) 3	0.015
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.564
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.137
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.260
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.560
	CNS0095610	Silvery flower (tetraploid) 1	0.309
	CNS0095611	Silvery flower (tetraploid) 2	0.242
	CNS0095612	Silvery flower (tetraploid) 3	0.778
	CNS0095613	Golden flower (tetraploid) 1	0.228
	CNS0095614	Golden flower (tetraploid) 2	0.320
	CNS0095615	Golden flower (tetraploid) 3	0.112
CRA001975	CRR073297	Stem 1	12.345
	CRR073298	Stem 2	4.181
	CRR073299	Stem 3	9.520
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.024
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.005
	CRR073308	Third green 3	0.028
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.144
	CRR073319	Tawny withering 2	1.026
	CRR073320	Tawny withering 3	0.138