Gene detail

Detail information of GWHGAAZE007974

Functional Annotation

Database	Orthologs	Annotation
Nr	CAN65654.1	hypothetical protein VITISV_040564 [Vitis vinifera]
Swissprot	tr\|Q9LYS2\|AB10C_ARATH	ABC transporter C family member 10
trEMBL	tr\|A5BH58\|A5BH58_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN65654.1}
TAIR10	AT3G59140.1	multidrug resistance-associated protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	58362202	58384773	+
GWHAAZE00000002	mRNA	58362202	58384773	+
GWHAAZE00000002	exon	58362202	58363584	+
GWHAAZE00000002	exon	58364372	58364692	+
GWHAAZE00000002	exon	58364811	58364897	+
GWHAAZE00000002	exon	58365667	58366260	+
GWHAAZE00000002	exon	58366496	58366660	+
GWHAAZE00000002	exon	58367349	58367643	+
GWHAAZE00000002	exon	58369819	58370066	+
GWHAAZE00000002	exon	58372785	58372848	+
GWHAAZE00000002	exon	58373215	58373454	+
GWHAAZE00000002	exon	58374075	58374156	+
GWHAAZE00000002	exon	58374665	58374703	+
GWHAAZE00000002	exon	58375937	58376164	+
GWHAAZE00000002	exon	58378850	58378952	+
GWHAAZE00000002	exon	58380110	58380217	+
GWHAAZE00000002	exon	58380729	58380850	+
GWHAAZE00000002	exon	58381139	58381184	+
GWHAAZE00000002	exon	58382073	58382204	+
GWHAAZE00000002	exon	58384690	58384773	+
GWHAAZE00000002	CDS	58362202	58363584	+
GWHAAZE00000002	CDS	58364372	58364692	+
GWHAAZE00000002	CDS	58364811	58364897	+
GWHAAZE00000002	CDS	58365667	58366260	+
GWHAAZE00000002	CDS	58366496	58366660	+
GWHAAZE00000002	CDS	58367349	58367643	+
GWHAAZE00000002	CDS	58369819	58370066	+
GWHAAZE00000002	CDS	58372785	58372848	+
GWHAAZE00000002	CDS	58373215	58373454	+
GWHAAZE00000002	CDS	58374075	58374156	+
GWHAAZE00000002	CDS	58374665	58374703	+
GWHAAZE00000002	CDS	58375937	58376164	+
GWHAAZE00000002	CDS	58378850	58378952	+
GWHAAZE00000002	CDS	58380110	58380217	+
GWHAAZE00000002	CDS	58380729	58380850	+
GWHAAZE00000002	CDS	58381139	58381184	+
GWHAAZE00000002	CDS	58382073	58382204	+
GWHAAZE00000002	CDS	58384690	58384773	+

Transcript Sequence
>GWHTAAZE007982 ATGGCAAGATTCAGCACACCGCTATTTGGAGCTGGAATTTTCAGTAAAATATCATTTTGGTGGTTGAATCCATTGATGACCCAAGGCCGAAAGAAAACAATTGAAGACAAAGATATACCCGAATTGCGTGAAGAGGACAGAGCCAAATCATGTTATCAGTCATTCATGGATCGACTCAATGAGCAAGAACAAACAAACCCATCATCCCAACCATCGATTTTGAGAACAATAATCTTATGCCATTGGAAGGATACTATAATATCTGGAATATTCGCAGTCTTAAAAATAATCACTCTATCCGCTGGTCCGCTTTTTCTTAATGCTTTCATAGAGGTTGCGGATGGGAAACAGAGTTTTAAGTACGAGGGATATGTATTGGCGATAGCACTTTTCGTTTCGAAGATAGCTGAATCTTTGTCACAAAGGCATTGGTACTTCAAAAGCAGAGTTATTGGTCTAAAAGTGAGGTCTATGTTGATGGCCGCTATTTACAGGAAGCAACAAAGATTAGGTAATGATGCTAAGAAGAAGCACTCAGGTGGTGAGATAATGAACTATATTACTATGGACGCTTATAGGGTAGGAGAGTTACCTTACTGGTTTCACCAGACATGGACCACGGCCCTTCAACTCTGTTTTGCAGTAGCAATTCTTTTTAGTGCAGTGGGCCTTGCTACTATCGCATCTTTGTTGGTAATAGTTTTGACATTCTTTTGTGGGACCCCGGTCGCTAAAGTTCAACTCGGTATCCAGCCTAAGCTCATGGTGGCACAGGACAGGATGATCAAGTCCATTTCTGAGGCTCTTGTAAGTATGAAGGTGTTAAAATTGTATGCCTGGGAAGGCAGGTTCAAGAAGGCGATCGAGGATTTTAGGGATGTTGAGCTTAAGTGGCTGAAGGCAGTACAGTTGCGAAGAGCCTATCATATATTCCTCTTCTGGGCTTCGCCTGTATTGGTCTCAACTGCCACTTTCGGGGCGTGTTATGTGCTTGGGATACCATTAAATGCTAGTAATGTTTTTACATTTGTTGCAACAATACGACTCGTTCAAGATCCTGTTAGGACTATCCCTGAAGTCATTGGGGCGGTCATACAGGCGAAAGTTTCATTCGCGAGAATTGTGGATTTTCTTCAAGCGCCGGAGCTGGAGAGTGGAGGAGCGCATCTCAGACAAAAGTGGAACTGGGACGATATGAACCGGAGTGTTTTGGTCCGGTCAGCCAATTTGTCGTGGGAAGAGAATTTGGGGAGACCTACACTTATCAATATTAATCTAGAGGTTAAAGTTGGTGAAAAGGTTGCCATATGTGGAGAGGTTGGATCAGGCAAGTCTAGCCTACTAGCTGCGATTCTGGGAGAGTTTCCGGCTATTGAAGGAAATATTTGTGTATATGGGAATGTTGCATATGTATCACAATCAGCATGGATTCAAACAGGAACTATAAGAGATAACATTTTATTTGGTTCTTCATTGGATTACCAAAGGTACCATCAAACAATAGATAAGTGTTCACTGGTAAAGGACCTTGAGCTTTTGCCTTATGGGGATCTCACTGAAATTGGGGAAAGAGGTGTTAATTTGAGCGGCGGACAGAAACAGAGGATTCAACTTGCGCGTGCACTTTACCGCGATGCTGATACTTATTTGTTGGATGATCCGTTCAGTGCTGTTGACGCACACACTGCTACAAGCCTATTCAATGAGTATGTGATGGGAGCTCTTGCTGGGAAGACAGTGTTGCTAGTTACGCATCAAGTTGATTTCCTTCCTGCATTTGATTCTGTTCTGCTGATGTCAAATGGGGAAATCAAGCATGCTGCTCCATACCATCAACTTCCATCCACCAGCCAAGAATTCCAAGACCTAGTCAATGCACACAAGGACACTGCTGGTACAACAACTGCAGCACAGAGTACAACTTCTCAAAAGGGTGAAGTTCTAAAGGGAGATAAAATCACTAAAACATCCATTATTGAGGATAAATCTACAGCATGTGAAGGTGACCAGCTTATTAAGCAAGAAGAGAAGGAGTTAGGGGACAAAGGAATTAAGCCATACATGCAATATTTAAACCAAAACAAAGGCCTATTATTTTTCTCTTTGATTACCGTCTCACAAATTGCTTTCATGGCTGCCCAGATTTATCAGAATTACTGGATGGCTGCAAATGTAGACAATGCTGATGTCAGCCCACAGCGATTAATTGTGGTTTATTTTGTGATTGGGTTAATATCAACAACATTTCTTGGAGTTAGGTCTTTTGGGACTGTGGTGTTGGGCATGCAATCTTCAAAGTTTATATTTTTGCAGCTATTGAGTTCTCTTTTTAGTGCACCCATGTCCTTTTATGACTCTACCCCACTTGGAAGGATATTAAGCCGGGTATCATCTGATTTGAGCATTGTGGATCTCGACATTGCATTTAGCCTCATGTCTGCTCTTGGATCCACTTCAAATGCATATACTAGTCTTGGTGTGCTAGCTGCGGTTACATGGCCAGTCTTGCTTATCACTATTCCAATGCTTTGTCTAGCCATTTCCCTACAGAGATATTACTTTGCCTCTGCAAAAGAGCTAATGAGGATAAATGGGACCAGCAAGTCATTGGTAGCAAATCATGTGGCGGAATCTATAGCAGGGGCTATGACAATAAGAGCCTTCGAGGAAGAAGAAAGATTCTTTGAGAAGAATTTTGAGCTAATTGACCAGAATTCAAGTCCATTCTTCCACAGCTTTGCAGCTAATGAGTGGTTGATCCAAAGAGTTGAAATTCTAAGCGCCATTGTTCTCTCTTCTTCTGCACTTTTCATGGTTTTGTTGCCTCCTGGAACTCTCAGCTCCGGAGGGCAGAAAGTTGGGATAGTTGGTAGAACTGGGAGTGGGAAGACTACTCTTATTGGTGCTTTATTTCGGCTTGTGGAGCCATTTGGAGGGAGAATTGTAATTGATGGGATTGACATTTCTACAATTGGACTACATGATTTGAGGTCTAGTTTTGGGGTACTTCCACAAGATCCTACTCTTTTTAATGGATCTGTTAGATACAATTTGGACCCTTTATCTCAACATTCTGATCAACAAATATGGGAGGTTCTTCATAAGTGTCAGTTAGGGGAAGCTGTAATGGAGAAAAAACAGGGCCTAGACACTCTAGTTGCTGAAGATGGATCAAATTGGAGCATGGGGCAAAGACAATTGTTTTGTTTGGGGAGGGCTTTATTGAGGAGAAGCAAAATATTGGTGCTTGATGAAGCCACTGCGTCTATTGATAATGCCACTGATCTTATTCTCCAAAAAACTATTAGGAAGGAATTTGTTGATTGCACTGTTATCACCGTGGCTCATAGAATACCTACCGTCATGGATTGCACCATGGTCCTAGCTATTAGTGATGGAAAACTAGTGGAGTATGATGAACCAAAGAACTTAATGAACAGAGAAGACTCATTATTCGGGCAGCTTGTCAAAGAATACTGGGAGGTAAACAGGGTCATTGATCCATTTTCTTCTACATGCGAGCTCGGCGAGGAGATGAGCGTAACAAGGGATTTGCCGACGAAGGAGGCTAACGTGCTCAAAGGGCACGAGGGTGCAGTTTTAGCAGCTAGGTTCAACGCAGACGGAAATTATTGCCTGAGTTGCGGCAAAGATCGGACCATACGCCTCTGGAATCCCCACCGTGGGATCCATATCAAGACCTACAAATCCCACGGCCGTGAAGTCCGCGATGTCCACGTCACTCCGGATAACTCCAAGCTGAGTTCTTGTGGTGGTGATCGACAAGTCTTTTACTGGGATGTAGCAACTGGTCGAGTTATTCGCAAGTTTCGTGGTCACGACAGTGAGGTGAATGCTGTTAAGTTTAATGAGTATGCATCTGTAATAGTCTCGGCAGGATATGATCGTTCGTTGCGTGCTTGGGATTGTAGATCTCACAGCACTGATCCAATTCAGACCATTGACACATTTTTGGATAGTGTAATGTCTGTTTGTTTAACAAAAACCGAGATTATTGCGGGAAGTGTTGATGGAACCGTTCGAACATTTGACATTCGAATTGGTAGGTACGTTGCGCGATCTGCTGGCGAGTTATTGCAAGAATACAAGGGCCATACTTGCAAGTCATTCAAAATGGATTGCTGCTTGACGAACAATGATGCACATGTAGCTGGTGGATCTGAAGATGGCTCTGTTTTCTTCTGGGATTTGGTTGATGCATCTGTTGTCTCCAGTTTTCGTGCTCACGATTCAGTGGTAACAAGTGTGAGTTATCACCCAAAGGACAGCTGCATGATAACTGCTTCTGTTGATGGAACTGTTAGGGTTTGGAAAACCTGA

Network for GWHGAAZE007974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	86	353	3.00E-21
PF00005.28	ABC_tran	423	555	8.20E-20
PF00664.24	ABC_membrane	699	937	5.00E-25
PF00005.28	ABC_tran	949	1088	3.30E-28
PF00400.33	WD40	1192	1225	8.20E-06
PF00400.33	WD40	1232	1267	0.023
PF00400.33	WD40	1272	1309	0.00011
PF00400.33	WD40	1363	1403	0.015
PF00400.33	WD40	1410	1445	1.10E-05

Protein Sequence

>GWHPAAZE007978
MARFSTPLFGAGIFSKISFWWLNPLMTQGRKKTIEDKDIPELREEDRAKSCYQSFMDRLNEQEQTNPSSQPSILRTIILCHWKDTIISGIFAVLKIITLSAGPLFLNAFIEVADGKQSFKYEGYVLAIALFVSKIAESLSQRHWYFKSRVIGLKVRSMLMAAIYRKQQRLGNDAKKKHSGGEIMNYITMDAYRVGELPYWFHQTWTTALQLCFAVAILFSAVGLATIASLLVIVLTFFCGTPVAKVQLGIQPKLMVAQDRMIKSISEALVSMKVLKLYAWEGRFKKAIEDFRDVELKWLKAVQLRRAYHIFLFWASPVLVSTATFGACYVLGIPLNASNVFTFVATIRLVQDPVRTIPEVIGAVIQAKVSFARIVDFLQAPELESGGAHLRQKWNWDDMNRSVLVRSANLSWEENLGRPTLININLEVKVGEKVAICGEVGSGKSSLLAAILGEFPAIEGNICVYGNVAYVSQSAWIQTGTIRDNILFGSSLDYQRYHQTIDKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYRDADTYLLDDPFSAVDAHTATSLFNEYVMGALAGKTVLLVTHQVDFLPAFDSVLLMSNGEIKHAAPYHQLPSTSQEFQDLVNAHKDTAGTTTAAQSTTSQKGEVLKGDKITKTSIIEDKSTACEGDQLIKQEEKELGDKGIKPYMQYLNQNKGLLFFSLITVSQIAFMAAQIYQNYWMAANVDNADVSPQRLIVVYFVIGLISTTFLGVRSFGTVVLGMQSSKFIFLQLLSSLFSAPMSFYDSTPLGRILSRVSSDLSIVDLDIAFSLMSALGSTSNAYTSLGVLAAVTWPVLLITIPMLCLAISLQRYYFASAKELMRINGTSKSLVANHVAESIAGAMTIRAFEEEERFFEKNFELIDQNSSPFFHSFAANEWLIQRVEILSAIVLSSSALFMVLLPPGTLSSGGQKVGIVGRTGSGKTTLIGALFRLVEPFGGRIVIDGIDISTIGLHDLRSSFGVLPQDPTLFNGSVRYNLDPLSQHSDQQIWEVLHKCQLGEAVMEKKQGLDTLVAEDGSNWSMGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQKTIRKEFVDCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPKNLMNREDSLFGQLVKEYWEVNRVIDPFSSTCELGEEMSVTRDLPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLSSCGGDRQVFYWDVATGRVIRKFRGHDSEVNAVKFNEYASVIVSAGYDRSLRAWDCRSHSTDPIQTIDTFLDSVMSVCLTKTEIIAGSVDGTVRTFDIRIGRYVARSAGELLQEYKGHTCKSFKMDCCLTNNDAHVAGGSEDGSVFFWDLVDASVVSSFRAHDSVVTSVSYHPKDSCMITASVDGTVRVWKT

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0005515	molecular_function	protein binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.980
	SRR3591706	second leaf	1.244
	SRR3591707	mature leaf	1.155
	SRR3591708	Shoot apex	1.957
	SRR3591709	Stem	1.270
	SRR3591710	White floral bud	1.104
	SRR3591711	White flower	1.010
	SRR3591712	Green floral bud	1.664
	SRR3591713	Yellow flower	1.424
SRP173429	SRR8316895	Juvenile bud stage	1.690
	SRR8316896	Juvenile bud stage	2.100
	SRR8316897	Juvenile bud stage	0.717
	SRR8316894	Third green stage	0.998
	SRR8316900	Third green stage	1.954
	SRR8316901	Third green stage	2.380
	SRR8316898	Complete white stage	0.888
	SRR8316899	Complete white stage	2.968
	SRR8316903	Complete white stage	1.364
	SRR8316902	Silver flowering stage	0.812
	SRR8316904	Silver flowering stage	1.188
	SRR8316905	Silver flowering stage	0.252
	SRR8316906	Gold flowering stage	1.551
	SRR8316907	Gold flowering stage	1.895
	SRR8316908	Gold flowering stage	1.959
SRP132670	SRR6706286	Control	1.583
	SRR6706287	Light intensity 50%	2.218
	SRR6706288	Light intensity 20%	2.379
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.604
	CNS0095593	Slightly white alabastrum(diploid) 2	2.014
	CNS0095594	Slightly white alabastrum(diploid) 3	1.890
	CNS0095595	Whole white alabastrum(diploid) 2	1.931
	CNS0095596	Whole white alabastrum(diploid) 3	2.112
	CNS0095597	Whole white alabastrum(diploid) 4	2.282
	CNS0095598	Silvery flower (diploied) 1	1.963
	CNS0095599	Silvery flower (diploied) 2	1.539
	CNS0095600	Silvery flower (diploied) 3	2.000
	CNS0095601	Golden flower (diploid) 1	1.630
	CNS0095602	Golden flower (diploid) 2	2.065
	CNS0095603	Golden flower (diploid) 3	1.663
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.628
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.204
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.759
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.840
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.117
	CNS0095610	Silvery flower (tetraploid) 1	3.702
	CNS0095611	Silvery flower (tetraploid) 2	3.097
	CNS0095612	Silvery flower (tetraploid) 3	4.997
	CNS0095613	Golden flower (tetraploid) 1	1.722
	CNS0095614	Golden flower (tetraploid) 2	2.564
	CNS0095615	Golden flower (tetraploid) 3	2.258
CRA001975	CRR073297	Stem 1	2.604
	CRR073298	Stem 2	2.407
	CRR073299	Stem 3	2.432
	CRR073300	Leaf 1	2.147
	CRR073301	Leaf 2	2.288
	CRR073302	Leaf 3	1.886
	CRR073303	Juvenile bud 1	2.744
	CRR073304	Juvenile bud 2	1.996
	CRR073305	Juvenile bud 3	1.646
	CRR073306	Third green 1	1.602
	CRR073307	Third green 2	1.251
	CRR073308	Third green 3	2.085
	CRR073309	Second white 1	1.554
	CRR073310	Second white 2	1.886
	CRR073311	Second white 3	2.105
	CRR073312	Silver flowering 1	1.375
	CRR073313	Silver flowering 2	0.961
	CRR073314	Silver flowering 3	1.601
	CRR073315	Gold flowering 1	2.071
	CRR073316	Gold flowering 2	1.761
	CRR073317	Gold flowering 3	1.572
	CRR073318	Tawny withering 1	2.317
	CRR073319	Tawny withering 2	1.957
	CRR073320	Tawny withering 3	2.005