Gene detail

Detail information of GWHGAAZE007949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010274930.1	0	PREDICTED: 2-isopropylmalate synthase A-like [Nelumbo nucifera]
Swissprot	tr\|O04973\|LEU1A_SOLPN	0	2-isopropylmalate synthase A
trEMBL	tr\|K4CJ46\|K4CJ46_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g014130.2.1}
TAIR10	AT1G74040.1	2E-165	2-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	57489070	57497841	-
GWHAAZE00000002	mRNA	57489070	57497841	-
GWHAAZE00000002	exon	57489070	57489169	-
GWHAAZE00000002	exon	57490129	57490250	-
GWHAAZE00000002	exon	57490767	57490901	-
GWHAAZE00000002	exon	57491282	57491371	-
GWHAAZE00000002	exon	57491961	57492035	-
GWHAAZE00000002	exon	57492164	57492194	-
GWHAAZE00000002	exon	57493794	57493894	-
GWHAAZE00000002	exon	57494275	57494361	-
GWHAAZE00000002	exon	57494547	57494639	-
GWHAAZE00000002	exon	57494967	57495047	-
GWHAAZE00000002	exon	57496961	57497174	-
GWHAAZE00000002	exon	57497309	57497841	-
GWHAAZE00000002	CDS	57497309	57497841	-
GWHAAZE00000002	CDS	57496961	57497174	-
GWHAAZE00000002	CDS	57494967	57495047	-
GWHAAZE00000002	CDS	57494547	57494639	-
GWHAAZE00000002	CDS	57494275	57494361	-
GWHAAZE00000002	CDS	57493794	57493894	-
GWHAAZE00000002	CDS	57492164	57492194	-
GWHAAZE00000002	CDS	57491961	57492035	-
GWHAAZE00000002	CDS	57491282	57491371	-
GWHAAZE00000002	CDS	57490767	57490901	-
GWHAAZE00000002	CDS	57490129	57490250	-
GWHAAZE00000002	CDS	57489070	57489169	-

Transcript Sequence
>GWHTAAZE007957 ATGAAGGCGACTACTACGTATTGTTGCACGTTCAACCATCAACCTCTTTATGTTCCAAACAAATTATTGAACGAGTCGTACGTTAGGGTTCTTGACAGTACCCTCCGAGATGGAGAGCAAGCCCCCGGGGCTACCATGACCCCGAGTCAAAAGCTAGCCATTGCCCATCAGCTGGCAAAACTCAGGGTTGACATTATTGAAGCCGGCTTCCCAGTATCATCACCTTCTGAATTTGAAACAACACGAATGATCGCAATGGAGGTTGGTAACACTGTTAATGACAAGACTGGCCGTGTACCCGTCATTGCTGGACTGTCAAGGCTGACACGCAAAGATATTGATGTGACATGGGAGGCTCTAAAGGGCGCGAAGTACCCGCGGCTGTTGACATTTATTCCATCAAGTGAGATTCACATGAAGTATAAGATAAAAAAGTCAAAGGAAGAGGTTTTGAGGAGTGTCAAGGAGTTGGTAAGTTATGCTAGAGGGTTGGGTATTATCGATATTGAGTTCGGCACGGAAGACTCTTCAAGGTCTGAAAAAGAGTTCTTATATCAAGTCTTTGAGGAAGCCATAAAAGCTGGGGCAACCACTATCGCTTTCGCCGACACTGTGGGATGTATGCTTCCAAATGAATGGGGCCAATTTATAGCTGATATGAAGGCAAATATTGTTGGGGTGGAAAATGTAATTATAGCAACTCATTGCCATGATGATCTTGGGGTTGCCACTGCAAATACATTAGCAGCTGTAAATGCAGGTGCTAGGGAAGTACATGTGACTATAAATGGCATTGGTGAAAGAGCTGGAAATGCTCCATTGGAAGAGTTTGTTATGGCTCTAAAGTCACGAGGAAAAGATCTCGCAGGTGGTCTGCACATCGGAATCAATTCGAGACATATTTTAAAATCTAGTAAGATGGTGGAAGAGCACAGTGGATTGTCAGTTCAACCAAATAAAGCCATAGTTGGAGCTAATGCCTTCTCTCATGGAAGTGGAATCCACCAGGATGGAATACTTAAAAATAGAACTACATACGAGTTTCTTTCCCGGGAAGAAATTGGTTGGTCTCCCTCAGCTCATAATGGTATCGTCCTTGGGAAACTCAGATCGACATGCATTGAAATCCGATTTCTAGAGCTTGGCTATGAATTGGATACCCAAAAATTTGAAGATGCTTTTAGGCGTTTCAAATTACTAGCTGAAAAGAAAAAGACTCTTTCGGATAATGATTTGGTACTGTTGATGAGCGATGGTGATAAAACATTTCAACCAGAAGTGACTTGGAAGCTGGTTGACATGGAGGTTACAAGCAGCACTAATAGTCTCTCAAGGGCAACAATTAAACTAATTGATGCTTGTGGAAAAGAACATGTTGCTTGTGGAGTTGGGACAAACTCAATCCATGCAACTTGCAAAGCAATTGATGACATTGTTCAGGTTCCTGTAAAAATCGTTGAGTACGATATGAAGTTGGGGGCTGAAGGCCTGGAGGGAGTAGCATCCATAAGGGTTGTAGTAAGCAAAGAACACAATTCAGTTACAGGTCCACAAATTATAAGTGGGAGTGGTGGAGGACTGGATATGACTATGGCTACTGCTCGAGCTTATATGAATGCACTAAACAAGCTGTTGGCTCTTAGAAGACAAGCCCAAATTTAA

Network for GWHGAAZE007949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	28	308	1.20E-85
PF08502.11	LeuA_dimer	407	545	2.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01649	leuA, IMS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyruvate metabolism	map00620
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0009098	biological_process	leucine biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003852	molecular_function	2-isopropylmalate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.124
	SRR3591706	second leaf	29.361
	SRR3591707	mature leaf	11.997
	SRR3591708	Shoot apex	3.484
	SRR3591709	Stem	0.121
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.016
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.049
	SRR8316896	Juvenile bud stage	0.037
	SRR8316897	Juvenile bud stage	0.032
	SRR8316894	Third green stage	0.077
	SRR8316900	Third green stage	0.191
	SRR8316901	Third green stage	0.221
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.154
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.022
	SRR6706287	Light intensity 50%	0.018
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.033
	CNS0095593	Slightly white alabastrum(diploid) 2	0.041
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.117
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.167
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.078
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.269
	CRR073302	Leaf 3	0.202
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.075
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000