Gene detail

Detail information of GWHGAAZE007942

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009370945.1	PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Pyrus x bretschneideri]
Swissprot	tr\|Q9FIB6\|PS12A_ARATH	26S proteasome non-ATPase regulatory subunit 12 homolog A
trEMBL	tr\|I1K4U3\|I1K4U3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G32030.4}
TAIR10	AT5G09900.2	26S proteasome regulatory subunit, putative (RPN5)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56975213	56986809	+
GWHAAZE00000002	mRNA	56975213	56986809	+
GWHAAZE00000002	exon	56975213	56975304	+
GWHAAZE00000002	exon	56975427	56975621	+
GWHAAZE00000002	exon	56977512	56977619	+
GWHAAZE00000002	exon	56977707	56977811	+
GWHAAZE00000002	exon	56977935	56977991	+
GWHAAZE00000002	exon	56978093	56978289	+
GWHAAZE00000002	exon	56982857	56982956	+
GWHAAZE00000002	exon	56983078	56983190	+
GWHAAZE00000002	exon	56984824	56984977	+
GWHAAZE00000002	exon	56985085	56985162	+
GWHAAZE00000002	exon	56986591	56986809	+
GWHAAZE00000002	five_prime_UTR	56975213	56975301	+
GWHAAZE00000002	CDS	56975302	56975304	+
GWHAAZE00000002	CDS	56975427	56975621	+
GWHAAZE00000002	CDS	56977512	56977619	+
GWHAAZE00000002	CDS	56977707	56977811	+
GWHAAZE00000002	CDS	56977935	56977991	+
GWHAAZE00000002	CDS	56978093	56978289	+
GWHAAZE00000002	CDS	56982857	56982956	+
GWHAAZE00000002	CDS	56983078	56983190	+
GWHAAZE00000002	CDS	56984824	56984977	+
GWHAAZE00000002	CDS	56985085	56985162	+
GWHAAZE00000002	CDS	56986591	56986809	+

Transcript Sequence
>GWHTAAZE007950 CCTAGGGTTTCATAAAACCTGATTCAGTCCCTTCGAAGTTCGAACTACTTCATCGATTTCTCACTCCGAATATCAGATTCTAATTCAAGATGGAAGGAGGGGGCAATTTGGAGGCGCAAATAGAGACACTGCTGAATGTGGAGAAGCAGATGAGGCTCAACGGCGATGTTGCCGGTACGAAGAAGGCGGCGACTGATATTTTGAAGCTTTGCTTCGATGCTCGTGCGTGGAAGACCCTCAATGATCAGATTGTATTGTTATCGAAGCGACGTGGTCAGCTTAAGCAGGCTGTAACTGCAATGGTCCAGCAAGCAATGCAATATATCGATGAGACACCAGATATTGAAACTAAGATAGAGCTTATTAAAACACTTAACAGTGTATCTGCTGGGAAGATCTATGTTGAAATAGAGAGGGCACGTTTAATCAAGAAGCTCGCAAAGATCAAGGAAGAACAAGGGCAAATAGCTGAGGCTGCCGATTTGATGCAAGAAGTTGCGGTGGAAACATTTGGTGCAATGGCAAAAACAGAAAAAATAGCTTTTATTCTTGAACAAGTTCGCCTATGTTTAGACCGCCAAGATTATGTGCGTGCACAAATACTCTCTAGGAAGATAAGTCCAAAAGTTTTTGAGGCTGATACTTCGAAAGAGAAGAAAAAGCCCAAAGAAGGTGACAGTGTTGTTGAAGAAGCGCCTGCTGATATACCGTCACTGTTGGAGTTGAAAAGAATCTACTATGAGTTAATGATACGGTACTATTCCCACAGCAACGATTACCTTGAAATCTGTCGCTGTTACAAGTCAATTTATGAGATACCTTCTGTCAAAGAAGACCCTGCTCAGTTTATACCTGTGTTGAGGAAAATATGCTGGTATTTAGTTTTGGCTCCACATGATCCTATGCAGTCAAGCCTTCTCAATGCTACCCTGGAAGATAAGAATCTCTCAGAGATTCCTCATTTTAGGTTGCTGTTAAAACAATTAATTACCATGGAGGTGATCCAGTGGAATGCTCTTTGGAATACGTTCAAGGATGAGTTTGAGAATGAAAAAAATATGCTTGGTGGCACTTTAGGTGACAAAGCTGCTGAAGATTTCAGACAGAGAGTGATTGAACATAACATCTTGGTTGTGTCGAAGTACTACTCACGGATAACCTTGAAGAGACTTGCAGATCTGCTATGTCTCAGCATTCAGGAAGCTGAGAAGCATCTTTCAGATATGGTCGTGTCGAAAGCATTGGTGGCGAAGGTTGACAGACCAATGGGAGTTGTGTGTTTCCAGACAGCTAAGGATAGCAATGAAATTCTAAATTCATGGGCCATGAACTTGGAAAAGCTACTTGACCTTGTTGAGAAGAGTTGCCACCAAATCCACAAGGAGACAATGGTCCACAAAGCTGCCTTGAAAGTTTGA

Network for GWHGAAZE007942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01399.28	PCI	290	399	3.00E-18
PF18098.2	RPN5_C	405	437	5.80E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03035	PSMD12, RPN5	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.768
	SRR3591706	second leaf	41.579
	SRR3591707	mature leaf	27.183
	SRR3591708	Shoot apex	67.659
	SRR3591709	Stem	54.457
	SRR3591710	White floral bud	76.102
	SRR3591711	White flower	72.315
	SRR3591712	Green floral bud	73.561
	SRR3591713	Yellow flower	78.063
SRP173429	SRR8316895	Juvenile bud stage	49.091
	SRR8316896	Juvenile bud stage	75.393
	SRR8316897	Juvenile bud stage	35.436
	SRR8316894	Third green stage	32.183
	SRR8316900	Third green stage	92.855
	SRR8316901	Third green stage	85.098
	SRR8316898	Complete white stage	36.345
	SRR8316899	Complete white stage	104.612
	SRR8316903	Complete white stage	56.280
	SRR8316902	Silver flowering stage	31.004
	SRR8316904	Silver flowering stage	44.004
	SRR8316905	Silver flowering stage	19.967
	SRR8316906	Gold flowering stage	68.262
	SRR8316907	Gold flowering stage	66.833
	SRR8316908	Gold flowering stage	74.727
SRP132670	SRR6706286	Control	73.511
	SRR6706287	Light intensity 50%	75.005
	SRR6706288	Light intensity 20%	79.292
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.728
	CNS0095593	Slightly white alabastrum(diploid) 2	47.359
	CNS0095594	Slightly white alabastrum(diploid) 3	47.287
	CNS0095595	Whole white alabastrum(diploid) 2	43.739
	CNS0095596	Whole white alabastrum(diploid) 3	41.533
	CNS0095597	Whole white alabastrum(diploid) 4	41.783
	CNS0095598	Silvery flower (diploied) 1	41.199
	CNS0095599	Silvery flower (diploied) 2	35.536
	CNS0095600	Silvery flower (diploied) 3	50.714
	CNS0095601	Golden flower (diploid) 1	34.661
	CNS0095602	Golden flower (diploid) 2	53.948
	CNS0095603	Golden flower (diploid) 3	51.726
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.523
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.241
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.607
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.958
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.899
	CNS0095609	Whole white alabastrum(tetraploid) 3	67.922
	CNS0095610	Silvery flower (tetraploid) 1	65.158
	CNS0095611	Silvery flower (tetraploid) 2	65.107
	CNS0095612	Silvery flower (tetraploid) 3	61.302
	CNS0095613	Golden flower (tetraploid) 1	38.081
	CNS0095614	Golden flower (tetraploid) 2	52.537
	CNS0095615	Golden flower (tetraploid) 3	43.131
CRA001975	CRR073297	Stem 1	78.425
	CRR073298	Stem 2	71.931
	CRR073299	Stem 3	74.029
	CRR073300	Leaf 1	81.989
	CRR073301	Leaf 2	73.955
	CRR073302	Leaf 3	75.738
	CRR073303	Juvenile bud 1	68.217
	CRR073304	Juvenile bud 2	69.707
	CRR073305	Juvenile bud 3	60.954
	CRR073306	Third green 1	42.080
	CRR073307	Third green 2	42.880
	CRR073308	Third green 3	40.785
	CRR073309	Second white 1	39.330
	CRR073310	Second white 2	48.812
	CRR073311	Second white 3	41.502
	CRR073312	Silver flowering 1	35.981
	CRR073313	Silver flowering 2	33.097
	CRR073314	Silver flowering 3	40.830
	CRR073315	Gold flowering 1	23.426
	CRR073316	Gold flowering 2	34.390
	CRR073317	Gold flowering 3	26.858
	CRR073318	Tawny withering 1	52.836
	CRR073319	Tawny withering 2	46.607
	CRR073320	Tawny withering 3	60.277