Gene detail

Detail information of GWHGAAZE007941

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009599608.1	1.9106E-178	PREDICTED: protein S-acyltransferase 8-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SB58\|ZDH19_ARATH	8E-164	Protein S-acyltransferase 8
trEMBL	tr\|B9SE95\|B9SE95_RICCO	2E-176	S-acyltransferase {ECO:0000256\|RuleBase:RU079119}
TAIR10	AT4G24630.1	4E-112	DHHC-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56948720	56953011	+
GWHAAZE00000002	mRNA	56948720	56953011	+
GWHAAZE00000002	exon	56948720	56948947	+
GWHAAZE00000002	exon	56949619	56949921	+
GWHAAZE00000002	exon	56950954	56951184	+
GWHAAZE00000002	exon	56952691	56953011	+
GWHAAZE00000002	CDS	56948720	56948947	+
GWHAAZE00000002	CDS	56949619	56949921	+
GWHAAZE00000002	CDS	56950954	56951184	+
GWHAAZE00000002	CDS	56952691	56953011	+

Transcript Sequence
>GWHTAAZE007949 ATATGCCCAAGTTTAGTCTCTCTCTATGTTTTTACTGTGCAGAAATTCTTCTTTGAGGGGAGGTTGATGTTTGGACCAGATGCTAAGTCACTGATGGTAACCCTGTTGCTTATTCTGGTTCCTGTTGTCATCTTTTGTGCTTTTGTTGCAAGGGATCTCGTCCATGAATTCCCAGAAGATAATTCGCAATATGCGATTCCGGTGGTAGCAGTTGTCTTCACAATTTATGTAGTGGTGCTTCTTTTTATAACCTCAACTAGGGACCCAGGCATTGTCCCCCGCAATTCCCATCCGCCAGAGGAAGAGCTTGGTTATGAATCTTCAGCATCAGTTGAGGCTGGTGAAAGGACACCAAGCCGTAAATTACCTCGCACCAAAGAAGTCTTCGTTAATGGTATGACCGTGAGGGTTAAATATTGCGATACATGCATGCTCTATCGCCCTCCTAGGACTTCTCATTGCTCTGTGTGTGATAATTGTGTGGAGCGATTTGATCACCATTGCCCTTGGTTGGGCCAATGCATTGGAAAGCGCAACTACCGTTGCTTCTTTCTCTTTGTTTTTTCATCGGCACTTCTCTGCGCATTCGTCTTCTCAATGTCGGCTTTGTACTTGAAATTCCTTGTTGATGATCATGGGACCGTGTGGAAGGCTATGAAAGAATCACCTCCAGCAATTATACTAATGGCTTATTGCTTTCTTTTGCTGTGGTTTGTCGGGGGTCTCACTGGCTTTCATTTATATCTTATAGGCACAAACCAGACTACGTATGAAAATTATCGATATAGAGCAGTCAACAGGAATGTCTATAACCGAGGCTGCGTGGGAAATTTTCTTGAAGTATTTTGCACAAAGATAGAACCCTCAAGAAACAAATTCCACTCATTTGTTTCTGAAGAGCCACCAAAGCTGCCAACCAAGAGTGGGCTCCACACGCCGGAACCAGAAGCAAATAATGACAGGCGAGAAAAAGTAGAAGATGATCTAGAGATAGGCAATGACCTCTTGAATATATCCCAACGCCGCGATTTTGAAGAACTCGGTGATATTCGAAGCAGAGGTGGCCAAAGGGCTATCTCTTAA

Network for GWHGAAZE007941

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01529.21	DHHC	138	262	2.90E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16675	ZDHHC9_14_18	Hippo signaling pathway - fly	map04391

Gene Ontology

GO term	Ontology	Name
GO:0016409	molecular_function	palmitoyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.579
	SRR3591706	second leaf	6.742
	SRR3591707	mature leaf	3.942
	SRR3591708	Shoot apex	15.371
	SRR3591709	Stem	11.954
	SRR3591710	White floral bud	6.455
	SRR3591711	White flower	7.704
	SRR3591712	Green floral bud	8.748
	SRR3591713	Yellow flower	7.892
SRP173429	SRR8316895	Juvenile bud stage	5.305
	SRR8316896	Juvenile bud stage	8.531
	SRR8316897	Juvenile bud stage	4.869
	SRR8316894	Third green stage	3.263
	SRR8316900	Third green stage	9.626
	SRR8316901	Third green stage	7.894
	SRR8316898	Complete white stage	3.695
	SRR8316899	Complete white stage	14.833
	SRR8316903	Complete white stage	5.899
	SRR8316902	Silver flowering stage	5.711
	SRR8316904	Silver flowering stage	4.936
	SRR8316905	Silver flowering stage	2.443
	SRR8316906	Gold flowering stage	10.207
	SRR8316907	Gold flowering stage	11.646
	SRR8316908	Gold flowering stage	10.043
SRP132670	SRR6706286	Control	9.079
	SRR6706287	Light intensity 50%	7.576
	SRR6706288	Light intensity 20%	8.941
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.441
	CNS0095593	Slightly white alabastrum(diploid) 2	7.823
	CNS0095594	Slightly white alabastrum(diploid) 3	7.397
	CNS0095595	Whole white alabastrum(diploid) 2	5.976
	CNS0095596	Whole white alabastrum(diploid) 3	6.493
	CNS0095597	Whole white alabastrum(diploid) 4	5.365
	CNS0095598	Silvery flower (diploied) 1	9.871
	CNS0095599	Silvery flower (diploied) 2	6.390
	CNS0095600	Silvery flower (diploied) 3	8.678
	CNS0095601	Golden flower (diploid) 1	7.217
	CNS0095602	Golden flower (diploid) 2	9.295
	CNS0095603	Golden flower (diploid) 3	8.330
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.322
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.784
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.784
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.694
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.481
	CNS0095610	Silvery flower (tetraploid) 1	10.341
	CNS0095611	Silvery flower (tetraploid) 2	10.400
	CNS0095612	Silvery flower (tetraploid) 3	13.262
	CNS0095613	Golden flower (tetraploid) 1	4.962
	CNS0095614	Golden flower (tetraploid) 2	8.759
	CNS0095615	Golden flower (tetraploid) 3	11.746
CRA001975	CRR073297	Stem 1	8.076
	CRR073298	Stem 2	9.447
	CRR073299	Stem 3	8.003
	CRR073300	Leaf 1	9.728
	CRR073301	Leaf 2	9.494
	CRR073302	Leaf 3	7.968
	CRR073303	Juvenile bud 1	5.973
	CRR073304	Juvenile bud 2	5.054
	CRR073305	Juvenile bud 3	7.443
	CRR073306	Third green 1	6.918
	CRR073307	Third green 2	4.301
	CRR073308	Third green 3	7.382
	CRR073309	Second white 1	6.594
	CRR073310	Second white 2	9.732
	CRR073311	Second white 3	6.580
	CRR073312	Silver flowering 1	6.574
	CRR073313	Silver flowering 2	5.770
	CRR073314	Silver flowering 3	5.149
	CRR073315	Gold flowering 1	3.458
	CRR073316	Gold flowering 2	6.160
	CRR073317	Gold flowering 3	3.471
	CRR073318	Tawny withering 1	14.108
	CRR073319	Tawny withering 2	9.908
	CRR073320	Tawny withering 3	10.685