Gene detail

Detail information of GWHGAAZE007932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007159766.1	1.012E-112	hypothetical protein PHAVU_002G265500g [Phaseolus vulgaris]
Swissprot	tr\|Q43463\|RAB7_SOYBN	3E-109	Ras-related protein Rab7
trEMBL	tr\|V7CR71\|V7CR71_PHAVU	4E-113	Uncharacterized protein {ECO:0000313\|EMBL:ESW31760.1}
TAIR10	AT4G09720.1	1E-82	RAB GTPase homolog G3A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56764131	56767483	+
GWHAAZE00000002	mRNA	56764131	56767483	+
GWHAAZE00000002	exon	56764131	56764300	+
GWHAAZE00000002	exon	56764395	56764558	+
GWHAAZE00000002	exon	56764969	56764995	+
GWHAAZE00000002	exon	56765137	56765236	+
GWHAAZE00000002	exon	56766055	56766201	+
GWHAAZE00000002	exon	56767172	56767252	+
GWHAAZE00000002	exon	56767334	56767483	+
GWHAAZE00000002	five_prime_UTR	56764131	56764300	+
GWHAAZE00000002	five_prime_UTR	56764395	56764508	+
GWHAAZE00000002	CDS	56764509	56764558	+
GWHAAZE00000002	CDS	56764969	56764995	+
GWHAAZE00000002	CDS	56765137	56765236	+
GWHAAZE00000002	CDS	56766055	56766201	+
GWHAAZE00000002	CDS	56767172	56767252	+
GWHAAZE00000002	CDS	56767334	56767483	+

Transcript Sequence
>GWHTAAZE007940 TTGAAGAGAAGTGCTCAAAGAATAAATCAAACCCTTAAATATTTAGTGACAACCAATATACAGACTAGACAGAGCTTTTCAAAGGAAGCACGATCTCTTAAAAAAATCATCAAGAAGAAAACTTCACAAATATTTATATATACAAAAAAAAAATTATCAAAGATTTTCTTACAGAGGAAGAGGATTGAAGAACAAAATCAAAGGGAAGTGTACAACTTTTTAGTTGAATCATCAAAGTTGTTTATGTTTATATTATCTATATAGATTTTTGATTTGTAAGGTTGATGATGGCGCAAAGAAGTTTGCTCAAGGTTATTGTTCTTGGCGATAGCGGGGTAGGAAAGACATCTTTGATGAATCAATATGTTTACAAGAAATTTGGTCTACAGTACAAAGCCACAATTGGTGCAGATTTTGTCACCAAAGAAATTCAGATTGATGACAAATTAGTGACTTTGCAAATATGGGACACAGCAGGACAAGAAAGGTTTCATAGCTTGGGAGTTGCATTTTACAGAGGTGCAGATTGTTGCATACTTGTGTATGATGTTAATATCCCCAAAACATTTGAAACACTACAAACTTGGCATGATGAGTTTCTCAAACAGGCGGATCCAACTAAACCTGAAACATTTCCCTTTGTGTTGCTCGGTAACAAGGTGGACGTAGATGGTGGGAATAGCCGACGGGTTTCGGAGAAAATAGCTAGCGATTGGTGCACTTCAAGGGGAAATATACCGTACTTTGAGACCTCAGCAAAAGAAGATTACAATATTGAAGATGCATTTTTTTGCATCGCGAAAATTGCACTTGAAAGTGATCACGAGCAAGATATGTAA

Network for GWHGAAZE007932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	9	174	7.50E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07897	RAB7A	Endocytosis	map04144
		Phagosome	map04145
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.335
	SRR3591706	second leaf	7.948
	SRR3591707	mature leaf	12.488
	SRR3591708	Shoot apex	0.521
	SRR3591709	Stem	0.421
	SRR3591710	White floral bud	0.273
	SRR3591711	White flower	0.843
	SRR3591712	Green floral bud	1.351
	SRR3591713	Yellow flower	0.723
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.237
	SRR8316897	Juvenile bud stage	0.143
	SRR8316894	Third green stage	0.242
	SRR8316900	Third green stage	0.440
	SRR8316901	Third green stage	0.463
	SRR8316898	Complete white stage	0.126
	SRR8316899	Complete white stage	0.384
	SRR8316903	Complete white stage	0.015
	SRR8316902	Silver flowering stage	0.448
	SRR8316904	Silver flowering stage	0.199
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.432
	SRR8316907	Gold flowering stage	0.166
	SRR8316908	Gold flowering stage	0.248
SRP132670	SRR6706286	Control	0.291
	SRR6706287	Light intensity 50%	0.577
	SRR6706288	Light intensity 20%	0.524
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.516
	CNS0095593	Slightly white alabastrum(diploid) 2	0.048
	CNS0095594	Slightly white alabastrum(diploid) 3	0.136
	CNS0095595	Whole white alabastrum(diploid) 2	0.063
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.104
	CNS0095600	Silvery flower (diploied) 3	0.121
	CNS0095601	Golden flower (diploid) 1	0.043
	CNS0095602	Golden flower (diploid) 2	0.145
	CNS0095603	Golden flower (diploid) 3	0.114
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.042
	CNS0095610	Silvery flower (tetraploid) 1	0.354
	CNS0095611	Silvery flower (tetraploid) 2	0.089
	CNS0095612	Silvery flower (tetraploid) 3	0.100
	CNS0095613	Golden flower (tetraploid) 1	0.017
	CNS0095614	Golden flower (tetraploid) 2	0.041
	CNS0095615	Golden flower (tetraploid) 3	0.023
CRA001975	CRR073297	Stem 1	1.468
	CRR073298	Stem 2	0.373
	CRR073299	Stem 3	0.795
	CRR073300	Leaf 1	1.071
	CRR073301	Leaf 2	0.554
	CRR073302	Leaf 3	0.542
	CRR073303	Juvenile bud 1	0.300
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.530
	CRR073307	Third green 2	0.240
	CRR073308	Third green 3	0.009
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.228
	CRR073311	Second white 3	0.062
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.515
	CRR073316	Gold flowering 2	12.152
	CRR073317	Gold flowering 3	2.410
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000