Detail information of GWHGAAZE007917


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002521646.12.37858E-23conserved hypothetical protein [Ricinus communis]
Swissprottr|Q3E6S8|DGP14_ARATH3E-17Putative protease Do-like 14
trEMBLtr|B9S6M7|B9S6M7_RICCO9E-24Putative uncharacterized protein {ECO:0000313|EMBL:EEF40753.1}
TAIR10AT5G27660.14E-15Trypsin family protein with PDZ domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5635792956358691-
GWHAAZE00000002mRNA5635792956358691-
GWHAAZE00000002exon5635849756358691-
GWHAAZE00000002exon5635792956358027-
GWHAAZE00000002CDS5635849756358691-
GWHAAZE00000002CDS5635792956358027-
Transcript Sequence

Network for GWHGAAZE007917

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17820.2PDZ_662938.60E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08669HTRA2, PRSS25 Apoptosis map04210
Apoptosis - flymap04214
Apoptosis - multiple speciesmap04215

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 8.031
SRR8316896Juvenile bud stage 12.244
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 3.622
SRR8316900Third green stage 13.748
SRR8316901Third green stage 13.858
SRR8316898Complete white stage 3.242
SRR8316899Complete white stage 16.767
SRR8316903Complete white stage 4.257
SRR8316902Silver flowering stage5.293
SRR8316904Silver flowering stage5.666
SRR8316905Silver flowering stage2.766
SRR8316906Gold flowering stage 7.609
SRR8316907Gold flowering stage 5.083
SRR8316908Gold flowering stage 2.382
SRP132670SRR6706286Control9.832
SRR6706287Light intensity 50%12.633
SRR6706288Light intensity 20%13.788
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.458
CNS0095593Slightly white alabastrum(diploid) 27.048
CNS0095594Slightly white alabastrum(diploid) 311.502
CNS0095595Whole white alabastrum(diploid) 28.866
CNS0095596Whole white alabastrum(diploid) 38.406
CNS0095597Whole white alabastrum(diploid) 46.950
CNS0095598Silvery flower (diploied) 117.205
CNS0095599Silvery flower (diploied) 211.027
CNS0095600Silvery flower (diploied) 38.072
CNS0095601Golden flower (diploid) 111.567
CNS0095602Golden flower (diploid) 26.019
CNS0095603Golden flower (diploid) 37.885
CNS0095604Slightly white alabastrum(tetraploid) 17.054
CNS0095605Slightly white alabastrum(tetraploid) 24.549
CNS0095606Slightly white alabastrum(tetraploid) 35.706
CNS0095607Whole white alabastrum(tetraploid) 14.848
CNS0095608Whole white alabastrum(tetraploid) 22.467
CNS0095609Whole white alabastrum(tetraploid) 36.643
CNS0095610Silvery flower (tetraploid) 12.731
CNS0095611Silvery flower (tetraploid) 24.154
CNS0095612Silvery flower (tetraploid) 35.160
CNS0095613Golden flower (tetraploid) 14.775
CNS0095614Golden flower (tetraploid) 22.825
CNS0095615Golden flower (tetraploid) 32.945
CRA001975CRR073297Stem 111.801
CRR073298Stem 26.091
CRR073299Stem 34.285
CRR073300Leaf 19.303
CRR073301Leaf 210.343
CRR073302Leaf 36.213
CRR073303Juvenile bud 15.848
CRR073304Juvenile bud 28.991
CRR073305Juvenile bud 36.986
CRR073306Third green 11.064
CRR073307Third green 21.900
CRR073308Third green 30.845
CRR073309Second white 13.496
CRR073310Second white 23.139
CRR073311Second white 31.562
CRR073312Silver flowering 11.423
CRR073313Silver flowering 22.362
CRR073314Silver flowering 33.940
CRR073315Gold flowering 19.035
CRR073316Gold flowering 215.143
CRR073317Gold flowering 33.813
CRR073318Tawny withering 110.779
CRR073319Tawny withering 210.804
CRR073320Tawny withering 35.143