Gene detail

Detail information of GWHGAAZE007908

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002276354.2	PREDICTED: probable inactive receptor kinase At5g10020 [Vitis vinifera]
Swissprot	tr\|Q0WR59\|Y5020_ARATH	Probable inactive receptor kinase At5g10020 (Precursor)
trEMBL	tr\|D7SW45\|D7SW45_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21494.3}
TAIR10	AT5G10020.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56083940	56089370	-
GWHAAZE00000002	mRNA	56083940	56089370	-
GWHAAZE00000002	exon	56083940	56084517	-
GWHAAZE00000002	exon	56085684	56086277	-
GWHAAZE00000002	exon	56086364	56087341	-
GWHAAZE00000002	exon	56088428	56089370	-
GWHAAZE00000002	CDS	56088428	56089370	-
GWHAAZE00000002	CDS	56086364	56087341	-
GWHAAZE00000002	CDS	56085684	56086277	-
GWHAAZE00000002	CDS	56083940	56084517	-

Transcript Sequence
>GWHTAAZE007916 ATGAATCTCACTTCTCTTCTCAGTGTTGACCACTTTCTCTCTCTACTTCTCTTCTCTCTGCTCTTCCACTCCATCTCTTCCTCTCAAGAAGAAGTTCGATCCCTTCTCGAATTCAAAAAGGGGATCCGAGAAGATCCCCTTGGCAAAGTACACCATTCATGGAACCAAATCACTTCATCAGATCCGGATTCTTGTCCTAACTCCTTTTACGGAGTTTCTTGTGATGAATCCGGTAAAATTACCGTCATTGCCCTCGATAGTCTGGGGTTAGTGGGGGACTTGAAGTTCTCCACATTGATTGGGTTGAAAATGCTGAGGAATTTGAGCCTCTCAGGTAATTTACTCACCGGTCGCCTTGTTCCATCATTAGGGTTTATGAGTTCTCTACAGCATTTGGATCTATCCAATAATCAATTTTACGGCCCCATTCCGGGTCGAATATCTGATCTTTGGGGGTTGAATTATCTGAATTTGTCTAGGAATAATTTTACCAATGGGTTCCCAAGTGGAATGAGTAATTTGCAGCAATTGAGAGTACTAGATTTGCATTCTAATGCTCTCTATGGTGATATAGAGGAGTTGTTATCGGAACTGAGAAATGTGGAGCATGTGGATTTAAGTTTTAACATGTTTTTCGGGTCGCTTTCTATGGATGCGGGGAGGATTTCGGGGCTGGTGAACACGGTGCAGCATGTGAATTTGAGCCACAATAGGTTGCATGGGGGATTCTTTGGCGAGGATTCGATTTCGTTGTTTAGGAACTTGAAAGTGTTGGATTTGGGTAATAATCAGTTGACAGGGGAGCTCCCTTCATTCGGGTGGTTGCCAAATCTTCGCGTTTTGCTTCTTGGAAATAATCAATTGTATGGGTTGATACCGGAAGAGCTCTTGGGGATCTCTATTCCTTTGGAAGAACTAGATCTTAGTGGCAATGGATTCTCGGGCTCACTGCAAGTAATTAACTCTACAACTTTGAGGACTTTGAATCTTTCATCAAATGAGCTGTTGGGTTCACTGCCAACTTCCTTGGGAAATTGTGTCATTGTTGATTTGAGCAGAAATAGGCTATCTGATGATATATCCGTTATGCAAAGTTGGGAACCGAATTTGGAAGTCCTTGATTTGAGCTCGAATCAGTTAACTGGAAATTTTCCTAACTTAACTTCTCAATTCACACAGTTGACTGTGCTTAATATTAGAAATAATTCCTTAGAAGGTAATTTGCCTTCTATTTTGGGAACCTACCCAAAGCTTTCTTCAGTTGACCTCAGTTCCAATGGACTTGTTGGCACAATTCCACGCGGGTTTTTCACTTCGATGACTTTAACAAGCCTGAATCTTTCAAGAAATCAGTTTACGGGTTCCATTCCTCTTCAGGGCTCTCATGCAAGTGAATTGTTATTTCTATCATCGGACCCACCAATTGAGTCCCTTGACCTTTCAGAAAATGCTTTGACAAGTGCCCTACCTTCGGAAATAGGTAACTTGGGTAGGCTTAAATTGTTGAATCTTGCTAAGAATCAGTTGTCTGGGGAGCTACCAGATGAATTGAATAAACTTAGTGCCTTGGAGTACCTTGATTTATCTAGCAATGGTTTCAATGGTAAGATCCCAGATAAGCTCCCCTCCAGTCTAAAGGTATTTAATGTGTCCCAAAATGATTTATCTGGAAAAATCCCAGAAAACTTGAGAAGTTTTCCTGATTCTTCATTTCATCCTGGAAATGAATTGCTGATTGTCCCTAGTGGGCCATCTCAGATTGGTGTTCCTTCTCCAATTATTAATAATAGAAAAGGGAATAATCACAGCTCAAAGTCTAGTGTAAGGATCGCCATCATAGTTGCCTCTGTTGGAGCTGCTCTTATGATTGCTTCCGTTCTAATAATTTATTATCGAGTAAAACATCAAGATTTTCGTGGAAACCACCCTCCGACTTCCTTAAGTTTTTCTAATGACCACTTGCTAACTTCAAACTCGAGGACATTGTCGGGTCAAGCAGAGTTTGGCACAGAAATTGTCGAGCACGTTGTGCCTGCAGGTTCAGCCTCGACAAACCCTAATTTGATCGATATGGACTCTGTACCCTCTGGAAGGAAATCCTCCCCAGGTTCCCCTATAACTTCCTCACCCCGTTTCATTGAGGCAATTGAACAACCCGTAATGTTGGATGTGTATTCGCCAGACCGTTTGGCCGGAGAATTGTTCTTGTTGGATGCTTCTATTGCATTTACAGCTGCGGAGTTATCTCGAGCTCCGGCAGAAGTTCTTGGTAGAAGCAGCCACGGCACTCTATACAAAGCTACACTAGATAGTGGGCACATGTTGACTGTGAAGTGGTTGCGCGTGGGATTGGTCAAACATAAGAAAGAATTTGCGAAGGAAGTTAAAAAGGTCGGATCAATTAGGCATCCAAATGTTGTACCTTTGCGAGCTTATTATTGGGGCCCAAGAGAACAAGAGAGGCTTGTTTTAGCCGACTACATCCAGGGAGATAGCTTGGCTCTTCATCTTTATGAGACGACACCTCGGAGATACTCCCTTTTATCATTGACCCAAAGGCTAAAAGTCGCCGTTGATGTAGCTCGGTGTCTTTTGTACCTTCACGACCGAGGCCTTCCTCATGGTAACCTAAAACCCACGAACATAATATTGGTCGGCCCGAATTACGATGCTCGTTTGACCGACTTTGGTCTCCACCGGTTAATGACCCCGACCGGCATTGCCGAGCAGATACTAAACCTAGGGGCCCTCGGTTACCGGGCCCCAGAACTCACCACCACCTCCAAACCAATCCCGTCTTTCAAGGCCGACGTGTACGCATTTGGAGTAATTCTTATGGAGTTGTTGACCCGGAGAAGTGCCGGTGACATCATCTCTGGTCAATCAGGAGCCGTCGATTTGACTGATTGGGTCCGGCTCTGCGATCAAGAAGGGAGAGGAATGGACTGTATTGACCGAGATATAGGTGGGGGAGAGGAGAATTCGAAAGCAATGGACGAATTACTTGCAATATCGATCAAATGTATTCTGCCGGTAAATGAAAGGCCTAATATCAGACAGGTGTTTGAAGATATTTGTTCTATATCAGTTTGA

Network for GWHGAAZE007908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	75	6.30E-07
PF00560.34	LRR_1	254	270	0.88
PF00560.34	LRR_1	325	346	0.74
PF00560.34	LRR_1	369	386	1.8
PF13516.7	LRR_6	439	454	0.24
PF13855.7	LRR_8	475	532	2.10E-07
PF00069.26	Pkinase	754	956	8.00E-27

Protein Sequence

>GWHPAAZE007912
MNLTSLLSVDHFLSLLLFSLLFHSISSSQEEVRSLLEFKKGIREDPLGKVHHSWNQITSSDPDSCPNSFYGVSCDESGKITVIALDSLGLVGDLKFSTLIGLKMLRNLSLSGNLLTGRLVPSLGFMSSLQHLDLSNNQFYGPIPGRISDLWGLNYLNLSRNNFTNGFPSGMSNLQQLRVLDLHSNALYGDIEELLSELRNVEHVDLSFNMFFGSLSMDAGRISGLVNTVQHVNLSHNRLHGGFFGEDSISLFRNLKVLDLGNNQLTGELPSFGWLPNLRVLLLGNNQLYGLIPEELLGISIPLEELDLSGNGFSGSLQVINSTTLRTLNLSSNELLGSLPTSLGNCVIVDLSRNRLSDDISVMQSWEPNLEVLDLSSNQLTGNFPNLTSQFTQLTVLNIRNNSLEGNLPSILGTYPKLSSVDLSSNGLVGTIPRGFFTSMTLTSLNLSRNQFTGSIPLQGSHASELLFLSSDPPIESLDLSENALTSALPSEIGNLGRLKLLNLAKNQLSGELPDELNKLSALEYLDLSSNGFNGKIPDKLPSSLKVFNVSQNDLSGKIPENLRSFPDSSFHPGNELLIVPSGPSQIGVPSPIINNRKGNNHSSKSSVRIAIIVASVGAALMIASVLIIYYRVKHQDFRGNHPPTSLSFSNDHLLTSNSRTLSGQAEFGTEIVEHVVPAGSASTNPNLIDMDSVPSGRKSSPGSPITSSPRFIEAIEQPVMLDVYSPDRLAGELFLLDASIAFTAAELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAKEVKKVGSIRHPNVVPLRAYYWGPREQERLVLADYIQGDSLALHLYETTPRRYSLLSLTQRLKVAVDVARCLLYLHDRGLPHGNLKPTNIILVGPNYDARLTDFGLHRLMTPTGIAEQILNLGALGYRAPELTTTSKPIPSFKADVYAFGVILMELLTRRSAGDIISGQSGAVDLTDWVRLCDQEGRGMDCIDRDIGGGEENSKAMDELLAISIKCILPVNERPNIRQVFEDICSISV

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.794
	SRR3591706	second leaf	8.550
	SRR3591707	mature leaf	5.750
	SRR3591708	Shoot apex	14.975
	SRR3591709	Stem	8.488
	SRR3591710	White floral bud	8.597
	SRR3591711	White flower	6.336
	SRR3591712	Green floral bud	23.436
	SRR3591713	Yellow flower	3.332
SRP173429	SRR8316895	Juvenile bud stage	7.071
	SRR8316896	Juvenile bud stage	10.116
	SRR8316897	Juvenile bud stage	3.792
	SRR8316894	Third green stage	5.247
	SRR8316900	Third green stage	12.526
	SRR8316901	Third green stage	13.180
	SRR8316898	Complete white stage	1.162
	SRR8316899	Complete white stage	16.129
	SRR8316903	Complete white stage	4.076
	SRR8316902	Silver flowering stage	1.173
	SRR8316904	Silver flowering stage	1.571
	SRR8316905	Silver flowering stage	0.869
	SRR8316906	Gold flowering stage	1.972
	SRR8316907	Gold flowering stage	2.067
	SRR8316908	Gold flowering stage	2.611
SRP132670	SRR6706286	Control	11.494
	SRR6706287	Light intensity 50%	12.383
	SRR6706288	Light intensity 20%	13.485
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.524
	CNS0095593	Slightly white alabastrum(diploid) 2	9.659
	CNS0095594	Slightly white alabastrum(diploid) 3	5.432
	CNS0095595	Whole white alabastrum(diploid) 2	7.825
	CNS0095596	Whole white alabastrum(diploid) 3	7.438
	CNS0095597	Whole white alabastrum(diploid) 4	6.802
	CNS0095598	Silvery flower (diploied) 1	4.221
	CNS0095599	Silvery flower (diploied) 2	3.077
	CNS0095600	Silvery flower (diploied) 3	3.744
	CNS0095601	Golden flower (diploid) 1	2.140
	CNS0095602	Golden flower (diploid) 2	4.063
	CNS0095603	Golden flower (diploid) 3	3.686
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.535
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.408
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.871
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.860
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.714
	CNS0095610	Silvery flower (tetraploid) 1	2.869
	CNS0095611	Silvery flower (tetraploid) 2	4.323
	CNS0095612	Silvery flower (tetraploid) 3	2.962
	CNS0095613	Golden flower (tetraploid) 1	1.049
	CNS0095614	Golden flower (tetraploid) 2	2.291
	CNS0095615	Golden flower (tetraploid) 3	1.468
CRA001975	CRR073297	Stem 1	14.048
	CRR073298	Stem 2	15.461
	CRR073299	Stem 3	14.691
	CRR073300	Leaf 1	23.056
	CRR073301	Leaf 2	22.520
	CRR073302	Leaf 3	12.749
	CRR073303	Juvenile bud 1	17.046
	CRR073304	Juvenile bud 2	10.179
	CRR073305	Juvenile bud 3	30.692
	CRR073306	Third green 1	2.187
	CRR073307	Third green 2	2.797
	CRR073308	Third green 3	2.442
	CRR073309	Second white 1	2.590
	CRR073310	Second white 2	0.913
	CRR073311	Second white 3	1.474
	CRR073312	Silver flowering 1	0.920
	CRR073313	Silver flowering 2	1.786
	CRR073314	Silver flowering 3	0.558
	CRR073315	Gold flowering 1	4.937
	CRR073316	Gold flowering 2	6.047
	CRR073317	Gold flowering 3	4.607
	CRR073318	Tawny withering 1	10.114
	CRR073319	Tawny withering 2	6.810
	CRR073320	Tawny withering 3	13.003