Detail information of GWHGAAZE007900


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010261157.16.7131E-134PREDICTED: UBP1-associated protein 2A-like [Nelumbo nucifera]
Swissprottr|O80678|UBA2B_ARATH5E-77UBP1-associated protein 2B
trEMBLtr|F6H4P1|F6H4P1_VITVI4E-126Putative uncharacterized protein {ECO:0000313|EMBL:CCB47105.1}
TAIR10AT2G41060.23E-65RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5595863355961078+
GWHAAZE00000002mRNA5595863355961078+
GWHAAZE00000002exon5595863355959250+
GWHAAZE00000002exon5595984955960548+
GWHAAZE00000002exon5596102355961078+
GWHAAZE00000002CDS5595863355959250+
GWHAAZE00000002CDS5595984955960548+
GWHAAZE00000002CDS5596102355961078+
Transcript Sequence

Network for GWHGAAZE007900

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_11221885.50E-12
PF00076.23RRM_12132821.50E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.163
SRR3591706second leaf16.142
SRR3591707mature leaf20.059
SRR3591708Shoot apex22.283
SRR3591709Stem26.074
SRR3591710White floral bud25.220
SRR3591711White flower32.340
SRR3591712Green floral bud24.736
SRR3591713Yellow flower19.762
SRP173429 SRR8316895Juvenile bud stage 20.852
SRR8316896Juvenile bud stage 25.867
SRR8316897Juvenile bud stage 14.556
SRR8316894Third green stage 13.481
SRR8316900Third green stage 33.482
SRR8316901Third green stage 29.898
SRR8316898Complete white stage 12.065
SRR8316899Complete white stage 44.660
SRR8316903Complete white stage 26.672
SRR8316902Silver flowering stage11.794
SRR8316904Silver flowering stage21.690
SRR8316905Silver flowering stage9.251
SRR8316906Gold flowering stage 25.282
SRR8316907Gold flowering stage 28.212
SRR8316908Gold flowering stage 26.679
SRP132670SRR6706286Control58.326
SRR6706287Light intensity 50%57.720
SRR6706288Light intensity 20%60.295
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.910
CNS0095593Slightly white alabastrum(diploid) 214.939
CNS0095594Slightly white alabastrum(diploid) 311.907
CNS0095595Whole white alabastrum(diploid) 212.846
CNS0095596Whole white alabastrum(diploid) 311.584
CNS0095597Whole white alabastrum(diploid) 414.518
CNS0095598Silvery flower (diploied) 114.214
CNS0095599Silvery flower (diploied) 29.217
CNS0095600Silvery flower (diploied) 329.565
CNS0095601Golden flower (diploid) 110.164
CNS0095602Golden flower (diploid) 232.366
CNS0095603Golden flower (diploid) 329.093
CNS0095604Slightly white alabastrum(tetraploid) 116.375
CNS0095605Slightly white alabastrum(tetraploid) 213.120
CNS0095606Slightly white alabastrum(tetraploid) 345.226
CNS0095607Whole white alabastrum(tetraploid) 17.117
CNS0095608Whole white alabastrum(tetraploid) 29.604
CNS0095609Whole white alabastrum(tetraploid) 328.021
CNS0095610Silvery flower (tetraploid) 139.647
CNS0095611Silvery flower (tetraploid) 232.536
CNS0095612Silvery flower (tetraploid) 322.571
CNS0095613Golden flower (tetraploid) 116.282
CNS0095614Golden flower (tetraploid) 227.407
CNS0095615Golden flower (tetraploid) 333.142
CRA001975CRR073297Stem 139.195
CRR073298Stem 245.010
CRR073299Stem 330.527
CRR073300Leaf 147.195
CRR073301Leaf 243.874
CRR073302Leaf 332.612
CRR073303Juvenile bud 130.566
CRR073304Juvenile bud 228.563
CRR073305Juvenile bud 341.081
CRR073306Third green 117.580
CRR073307Third green 216.628
CRR073308Third green 316.988
CRR073309Second white 120.045
CRR073310Second white 214.592
CRR073311Second white 315.225
CRR073312Silver flowering 114.517
CRR073313Silver flowering 220.455
CRR073314Silver flowering 313.233
CRR073315Gold flowering 114.260
CRR073316Gold flowering 225.593
CRR073317Gold flowering 325.415
CRR073318Tawny withering 127.768
CRR073319Tawny withering 221.474
CRR073320Tawny withering 319.761