Detail information of GWHGAAZE007896


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011021882.11.0697E-155PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like isoform X2 [Populus euphratica]
trEMBLtr|B9H574|B9H574_POPTR1E-154SAP domain-containing family protein {ECO:0000313|EMBL:EEE93325.1}
TAIR10AT4G39680.27E-57SAP domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5570097955705826+
GWHAAZE00000002mRNA5570097955705826+
GWHAAZE00000002exon5570097955702491+
GWHAAZE00000002exon5570387255704066+
GWHAAZE00000002exon5570506255705165+
GWHAAZE00000002exon5570533555705826+
GWHAAZE00000002CDS5570097955702491+
GWHAAZE00000002CDS5570387255704066+
GWHAAZE00000002CDS5570506255705165+
GWHAAZE00000002CDS5570533555705826+
Transcript Sequence

Network for GWHGAAZE007896

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02037.28SAP14471.60E-10
PF16294.6RSB_motif7247622.70E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12875ACIN1, ACINUS Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE007896.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550556065707580Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.453
SRR3591706second leaf26.975
SRR3591707mature leaf29.906
SRR3591708Shoot apex34.248
SRR3591709Stem42.274
SRR3591710White floral bud40.331
SRR3591711White flower42.153
SRR3591712Green floral bud33.217
SRR3591713Yellow flower33.558
SRP173429 SRR8316895Juvenile bud stage 33.730
SRR8316896Juvenile bud stage 46.848
SRR8316897Juvenile bud stage 21.733
SRR8316894Third green stage 18.621
SRR8316900Third green stage 41.903
SRR8316901Third green stage 41.636
SRR8316898Complete white stage 12.895
SRR8316899Complete white stage 50.374
SRR8316903Complete white stage 33.391
SRR8316902Silver flowering stage19.161
SRR8316904Silver flowering stage29.993
SRR8316905Silver flowering stage14.149
SRR8316906Gold flowering stage 45.682
SRR8316907Gold flowering stage 43.091
SRR8316908Gold flowering stage 42.152
SRP132670SRR6706286Control50.170
SRR6706287Light intensity 50%42.960
SRR6706288Light intensity 20%40.930
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.877
CNS0095593Slightly white alabastrum(diploid) 225.694
CNS0095594Slightly white alabastrum(diploid) 324.934
CNS0095595Whole white alabastrum(diploid) 222.510
CNS0095596Whole white alabastrum(diploid) 319.083
CNS0095597Whole white alabastrum(diploid) 421.895
CNS0095598Silvery flower (diploied) 141.021
CNS0095599Silvery flower (diploied) 232.862
CNS0095600Silvery flower (diploied) 336.226
CNS0095601Golden flower (diploid) 144.581
CNS0095602Golden flower (diploid) 237.703
CNS0095603Golden flower (diploid) 339.964
CNS0095604Slightly white alabastrum(tetraploid) 144.077
CNS0095605Slightly white alabastrum(tetraploid) 233.475
CNS0095606Slightly white alabastrum(tetraploid) 372.018
CNS0095607Whole white alabastrum(tetraploid) 126.619
CNS0095608Whole white alabastrum(tetraploid) 216.687
CNS0095609Whole white alabastrum(tetraploid) 344.576
CNS0095610Silvery flower (tetraploid) 157.736
CNS0095611Silvery flower (tetraploid) 250.489
CNS0095612Silvery flower (tetraploid) 345.777
CNS0095613Golden flower (tetraploid) 143.432
CNS0095614Golden flower (tetraploid) 256.040
CNS0095615Golden flower (tetraploid) 348.497
CRA001975CRR073297Stem 161.143
CRR073298Stem 256.626
CRR073299Stem 320.819
CRR073300Leaf 161.881
CRR073301Leaf 257.196
CRR073302Leaf 318.157
CRR073303Juvenile bud 119.776
CRR073304Juvenile bud 212.958
CRR073305Juvenile bud 329.361
CRR073306Third green 18.320
CRR073307Third green 25.952
CRR073308Third green 310.189
CRR073309Second white 15.480
CRR073310Second white 210.125
CRR073311Second white 38.707
CRR073312Silver flowering 17.379
CRR073313Silver flowering 26.919
CRR073314Silver flowering 38.384
CRR073315Gold flowering 19.095
CRR073316Gold flowering 218.341
CRR073317Gold flowering 34.929
CRR073318Tawny withering 122.018
CRR073319Tawny withering 220.421
CRR073320Tawny withering 320.867