Gene detail

Detail information of GWHGAAZE007881

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097592.1	0	PREDICTED: probable trehalose-phosphate phosphatase J [Sesamum indicum]
Swissprot	tr\|Q5HZ05\|TPPJ_ARATH	1E-162	Probable trehalose-phosphate phosphatase J
trEMBL	tr\|A0A022QBY5\|A0A022QBY5_ERYGU	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}
TAIR10	AT5G65140.1	7E-122	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	55202395	55206582	-
GWHAAZE00000002	mRNA	55202395	55206582	-
GWHAAZE00000002	exon	55202395	55202502	-
GWHAAZE00000002	exon	55202751	55202843	-
GWHAAZE00000002	exon	55202969	55203039	-
GWHAAZE00000002	exon	55203203	55203272	-
GWHAAZE00000002	exon	55203499	55203576	-
GWHAAZE00000002	exon	55204618	55204674	-
GWHAAZE00000002	exon	55204814	55204906	-
GWHAAZE00000002	exon	55205036	55205107	-
GWHAAZE00000002	exon	55205206	55205346	-
GWHAAZE00000002	exon	55206298	55206582	-
GWHAAZE00000002	CDS	55206298	55206582	-
GWHAAZE00000002	CDS	55205206	55205346	-
GWHAAZE00000002	CDS	55205036	55205107	-
GWHAAZE00000002	CDS	55204814	55204906	-
GWHAAZE00000002	CDS	55204618	55204674	-
GWHAAZE00000002	CDS	55203499	55203576	-
GWHAAZE00000002	CDS	55203203	55203272	-
GWHAAZE00000002	CDS	55202969	55203039	-
GWHAAZE00000002	CDS	55202751	55202843	-
GWHAAZE00000002	CDS	55202395	55202502	-

Transcript Sequence
>GWHTAAZE007889 ATGACAAAGAAGAATGTGTTGGTTTCGGAGGGGAAATCGGGTATCGAGATGGCGATAACGGTGGCAGTTTCGAGCTCGTCGTCTATTTTTCCGGCAGCAGTGCAGAAGCCGCCGGCGATTCCCGGCGGTTACATCACCATTTCAAGGAAGAAGCTATTGCAGAACTTGGAGATAAGTGGTGGAGCAAGAATAAGCTCTTGGGTTGAGTCTATGAAAGCTTCATCACCTACTCATCATAAAGCTGCTCCTTCTAATTTCTCTGATGATCATACCTCCTCTTGGATGGTTCATCATCCATCAGCAATTGACATGTTCGAGCAGATTATAACTGCATCAAAAGGGAAACAAATAGTAATGTTTCTCGATTATGATGGGACCCTCTCTCCAATAGTCGATGATCCTGATCGCGCTTTCATGTCTGATGCAATGAGAGCAACAGTGAGAAAACTTGCCAGATATTTTCCAACTGCTATAGTGAGTGGGAGGTGCAGAGACAAGGTATATAGTTTTGTCCGATTAGCAGAATTGTACTATGCTGGAAGCCATGGCATGGACATAAAAGGACCATCTAAAGGTTCCAAATACAAGAAAAGTAGGGAGACTCTTCTCTGCCAACCAGCCAGTGAATTCCTTCCTATGATCGACGAGAAATGGAGTGAACTGGCACAAGAAGTTAGGTCTGTGCTAAAGGAGTACCCAAAGCTTAGATTGACCCAAGGAAGGAAGGTACTAGAGATCCGTCCTACTATTAAATGGGACAAAGGGAAAGCCCTCGAATTTTTGCTGGAGTCACTTGGATATGCTAATTGCACTGATGTTTTCCCAATTTACATTGGAGATGACAGAACTGATGAAGATGCATTCAAGGTATTGAGAGAGAGAGGACAGGGATTTGGCATCCTTGTCTCCAAAATTCCAAAGGACACAAATGCATCTTATTCTTTGCAAGAACCATCTGAGGTTATGAACTTTTTGCGACGCTTGGTAGAGTGGAAACGACTATCATTAAGACGGCAATTCAGGATGCGAAGACGATTGGAGGGAATAAAAATATCCCTACCAAACTGA

Network for GWHGAAZE007881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02358.17	Trehalose_PPase	120	216	2.20E-26
PF02358.17	Trehalose_PPase	217	319	9.30E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01087	otsB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.411
	SRR3591706	second leaf	38.276
	SRR3591707	mature leaf	30.993
	SRR3591708	Shoot apex	27.610
	SRR3591709	Stem	100.587
	SRR3591710	White floral bud	107.642
	SRR3591711	White flower	692.978
	SRR3591712	Green floral bud	5.068
	SRR3591713	Yellow flower	704.859
SRP173429	SRR8316895	Juvenile bud stage	6.791
	SRR8316896	Juvenile bud stage	6.218
	SRR8316897	Juvenile bud stage	1.757
	SRR8316894	Third green stage	2.578
	SRR8316900	Third green stage	4.749
	SRR8316901	Third green stage	4.082
	SRR8316898	Complete white stage	88.097
	SRR8316899	Complete white stage	17.914
	SRR8316903	Complete white stage	106.871
	SRR8316902	Silver flowering stage	556.820
	SRR8316904	Silver flowering stage	718.579
	SRR8316905	Silver flowering stage	315.648
	SRR8316906	Gold flowering stage	1079.124
	SRR8316907	Gold flowering stage	1109.807
	SRR8316908	Gold flowering stage	1350.900
SRP132670	SRR6706286	Control	4.445
	SRR6706287	Light intensity 50%	5.037
	SRR6706288	Light intensity 20%	3.737
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.088
	CNS0095593	Slightly white alabastrum(diploid) 2	8.329
	CNS0095594	Slightly white alabastrum(diploid) 3	7.771
	CNS0095595	Whole white alabastrum(diploid) 2	4.552
	CNS0095596	Whole white alabastrum(diploid) 3	3.488
	CNS0095597	Whole white alabastrum(diploid) 4	3.988
	CNS0095598	Silvery flower (diploied) 1	266.543
	CNS0095599	Silvery flower (diploied) 2	256.041
	CNS0095600	Silvery flower (diploied) 3	849.393
	CNS0095601	Golden flower (diploid) 1	326.413
	CNS0095602	Golden flower (diploid) 2	589.486
	CNS0095603	Golden flower (diploid) 3	585.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.980
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.497
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.844
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.058
	CNS0095610	Silvery flower (tetraploid) 1	940.434
	CNS0095611	Silvery flower (tetraploid) 2	1128.987
	CNS0095612	Silvery flower (tetraploid) 3	955.607
	CNS0095613	Golden flower (tetraploid) 1	635.955
	CNS0095614	Golden flower (tetraploid) 2	716.030
	CNS0095615	Golden flower (tetraploid) 3	373.736
CRA001975	CRR073297	Stem 1	3.700
	CRR073298	Stem 2	2.999
	CRR073299	Stem 3	4.038
	CRR073300	Leaf 1	4.545
	CRR073301	Leaf 2	3.382
	CRR073302	Leaf 3	1.563
	CRR073303	Juvenile bud 1	5.310
	CRR073304	Juvenile bud 2	6.518
	CRR073305	Juvenile bud 3	7.314
	CRR073306	Third green 1	203.307
	CRR073307	Third green 2	211.026
	CRR073308	Third green 3	179.107
	CRR073309	Second white 1	724.011
	CRR073310	Second white 2	451.909
	CRR073311	Second white 3	444.317
	CRR073312	Silver flowering 1	501.044
	CRR073313	Silver flowering 2	521.977
	CRR073314	Silver flowering 3	526.262
	CRR073315	Gold flowering 1	7.538
	CRR073316	Gold flowering 2	7.644
	CRR073317	Gold flowering 3	4.952
	CRR073318	Tawny withering 1	63.683
	CRR073319	Tawny withering 2	169.164
	CRR073320	Tawny withering 3	71.395