Gene detail

Detail information of GWHGAAZE007870

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009627964.1	PREDICTED: cyclin-dependent kinase C-1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LFT8\|CDKC1_ARATH	Cyclin-dependent kinase C-1
trEMBL	tr\|A0A075F2G7\|A0A075F2G7_TOBAC	Cyclin dependent kinase C {ECO:0000313\|EMBL:AIE54287.1}
TAIR10	AT5G10270.1	cyclin-dependent kinase C;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	54872641	54890584	-
GWHAAZE00000002	mRNA	54872641	54890584	-
GWHAAZE00000002	exon	54890341	54890584	-
GWHAAZE00000002	exon	54881560	54881641	-
GWHAAZE00000002	exon	54881354	54881444	-
GWHAAZE00000002	exon	54881224	54881253	-
GWHAAZE00000002	exon	54880949	54881061	-
GWHAAZE00000002	exon	54880774	54880846	-
GWHAAZE00000002	exon	54880554	54880674	-
GWHAAZE00000002	exon	54879731	54879848	-
GWHAAZE00000002	exon	54878125	54878264	-
GWHAAZE00000002	exon	54877968	54878025	-
GWHAAZE00000002	exon	54873883	54873953	-
GWHAAZE00000002	exon	54872641	54873172	-
GWHAAZE00000002	five_prime_UTR	54890451	54890584	-
GWHAAZE00000002	CDS	54890341	54890450	-
GWHAAZE00000002	CDS	54881560	54881641	-
GWHAAZE00000002	CDS	54881354	54881444	-
GWHAAZE00000002	CDS	54881224	54881253	-
GWHAAZE00000002	CDS	54880949	54881061	-
GWHAAZE00000002	CDS	54880774	54880846	-
GWHAAZE00000002	CDS	54880554	54880674	-
GWHAAZE00000002	CDS	54879731	54879848	-
GWHAAZE00000002	CDS	54878125	54878264	-
GWHAAZE00000002	CDS	54877968	54878025	-
GWHAAZE00000002	CDS	54873883	54873953	-
GWHAAZE00000002	CDS	54872641	54873172	-

Transcript Sequence
>GWHTAAZE007878 CCGCCTTCACACTTGCATAGTTTTCCTCTCAAAGTTTCTTTGATTTTTTTTGAATTTGCCCTCTCTATCACCAATCACAAAATCTAGAGGGAAAAGAATAAAAAGAAAAAAGTAATAGAGAGAGAATTGGAGAAATGGCTGGGGCGGTTTACGGTCAGTTAAATCTGGAAGAGGCGCCGTCATGGGGGTCTAGAAGCGTAGACTGCTTCGAGAAATTGGAACAGATTGGTGAAGGAACCTACGGTCAAGTATATATGGCCAGAGAAATAAAAACTGGGGAAATCGTGGCTTTAAAGAAGATACGCATGGACAATGAAAAAGAAGGGTTTCCCATAACCGCCATTCGGGAAATTAAAATTCTAAAGAAGCTGCAGCATGAAAATGTCATTAAGTTAAAGGAGATTGTGACCTCTCAAGGTCCTGAGGCGGATGAGCCAATAAGAGCAGATAGCAATAATAAGTACAAGGGACACATTTACATGGTTTTTGAGTACATGGACCATGACTTAACAGGCCTTGCTGATCGTCCAGGACTGAGATTTACTATTCCCCAGATCAAGTGTTATATGAAGCAACTACTGACAGGGCTTCATTACTGTCATGTCAATCAAGTACTTCACCGGGACATTAAAGGATCTAATCTTCTCATTGATAATGAGGGAAATCTAAAGCTTGCGGATTTTGGACTAGCTCGGTCATTTTCTAGTGACCACAATGGAAATCTCACAAACCGTGTTATTACATTGTGGTATAGACCTCCAGAGTTGCTGCTTGGGGCTACAAAGTATGGTCCGTCTGTTGATATGTGGTCAGTTGGTTGTATATTTGCGGAGCTTTTGCAAGGGAAACCAATCTTACCTGGGAAAAATGAGCCCGAACAATTGAACAAGATATATGAACTCTGTGGAACTCCTGACGAGATTAACTGGCCTGGCGTTTCCAAAACTCCCTGGTATAATAAGTTCAAACCATCGAGACCAATGAAGCGGCGAGTCAGGGATCTTTTCAGACATTTTGACCGCCATGCCCTCGAGTTACTGGAGAAAATGCTGACCCTTGATCCGTCTCAGAGAATATCTGCAAAGGATGCGCTTGATGCTGAATATTTCTGGACCGACCCCTTGCCATGCGATCCCAAAAGTTTGCCTAAATATGAATCCTCGCACGAGTTCCAAACAAAGAAGAAGAGACAACAACAACGACAGAACGAAGAACTAGCCAAGAGACAGAAGCTGCAGCACCCACAGCAGCATGCCCGCCTCCCTCCTATCCAACAAACGGGCCAACCTCATGCACCACAGTGGGCTGGCCATAACCACCTGGTCAGCAATTCCCAGCCTCCACTCTCTACTGGTCCTACCCATCACCAGTATGGAAAGCCTCGTGGTCCTCCTGGAGGGACCAATAGGTACCCTCCAAGTGGTAACCCTAGCAGTGGCTATTATCCTGATCGTGCCGGTCAAGGTGGTGGCTTTAGTGGTGGGCCATATCCACCACAAGGCCGGGGACCACCTAGCAGTGTTGCTCCTCCGGGGCCCAGAGGAGCCACTGGAGGGTATGGAGCGGGTCCACCAAGTTATTCACAAAGTGGTCAATATGGAGGGTCGGGTGCGGGTAGAGGTCCGAACCCGATGGGAAGTAATCGGAATCAGCAGTATGGTTGGCAGCAATGA

Network for GWHGAAZE007870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	25	325	5.70E-75

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.226
	SRR3591706	second leaf	4.837
	SRR3591707	mature leaf	4.039
	SRR3591708	Shoot apex	11.958
	SRR3591709	Stem	6.981
	SRR3591710	White floral bud	6.725
	SRR3591711	White flower	8.687
	SRR3591712	Green floral bud	8.148
	SRR3591713	Yellow flower	8.982
SRP173429	SRR8316895	Juvenile bud stage	6.542
	SRR8316896	Juvenile bud stage	9.252
	SRR8316897	Juvenile bud stage	4.447
	SRR8316894	Third green stage	2.621
	SRR8316900	Third green stage	7.329
	SRR8316901	Third green stage	8.469
	SRR8316898	Complete white stage	1.387
	SRR8316899	Complete white stage	9.196
	SRR8316903	Complete white stage	2.373
	SRR8316902	Silver flowering stage	1.947
	SRR8316904	Silver flowering stage	2.329
	SRR8316905	Silver flowering stage	0.857
	SRR8316906	Gold flowering stage	4.881
	SRR8316907	Gold flowering stage	5.116
	SRR8316908	Gold flowering stage	7.236
SRP132670	SRR6706286	Control	8.780
	SRR6706287	Light intensity 50%	7.461
	SRR6706288	Light intensity 20%	8.782
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.768
	CNS0095593	Slightly white alabastrum(diploid) 2	7.156
	CNS0095594	Slightly white alabastrum(diploid) 3	6.582
	CNS0095595	Whole white alabastrum(diploid) 2	6.681
	CNS0095596	Whole white alabastrum(diploid) 3	7.086
	CNS0095597	Whole white alabastrum(diploid) 4	8.547
	CNS0095598	Silvery flower (diploied) 1	5.188
	CNS0095599	Silvery flower (diploied) 2	3.214
	CNS0095600	Silvery flower (diploied) 3	4.636
	CNS0095601	Golden flower (diploid) 1	3.405
	CNS0095602	Golden flower (diploid) 2	5.107
	CNS0095603	Golden flower (diploid) 3	5.344
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.441
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.900
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.676
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.074
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.477
	CNS0095610	Silvery flower (tetraploid) 1	9.153
	CNS0095611	Silvery flower (tetraploid) 2	6.663
	CNS0095612	Silvery flower (tetraploid) 3	5.139
	CNS0095613	Golden flower (tetraploid) 1	7.461
	CNS0095614	Golden flower (tetraploid) 2	9.043
	CNS0095615	Golden flower (tetraploid) 3	7.489
CRA001975	CRR073297	Stem 1	8.889
	CRR073298	Stem 2	7.962
	CRR073299	Stem 3	6.925
	CRR073300	Leaf 1	9.566
	CRR073301	Leaf 2	8.330
	CRR073302	Leaf 3	3.702
	CRR073303	Juvenile bud 1	5.560
	CRR073304	Juvenile bud 2	3.547
	CRR073305	Juvenile bud 3	5.535
	CRR073306	Third green 1	0.176
	CRR073307	Third green 2	0.403
	CRR073308	Third green 3	0.453
	CRR073309	Second white 1	0.874
	CRR073310	Second white 2	0.943
	CRR073311	Second white 3	1.007
	CRR073312	Silver flowering 1	1.173
	CRR073313	Silver flowering 2	0.875
	CRR073314	Silver flowering 3	1.431
	CRR073315	Gold flowering 1	1.826
	CRR073316	Gold flowering 2	2.779
	CRR073317	Gold flowering 3	1.645
	CRR073318	Tawny withering 1	4.477
	CRR073319	Tawny withering 2	4.387
	CRR073320	Tawny withering 3	4.956