Gene detail

Detail information of GWHGAAZE007834

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI33150.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P0CE10\|Y4102_ARATH	Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBL	tr\|A0A068TYY8\|A0A068TYY8_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01520.1}
TAIR10	AT5G10370.1	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	53897410	53906678	+
GWHAAZE00000002	mRNA	53897410	53906678	+
GWHAAZE00000002	exon	53897410	53897758	+
GWHAAZE00000002	exon	53898877	53899454	+
GWHAAZE00000002	exon	53902050	53905191	+
GWHAAZE00000002	exon	53906332	53906678	+
GWHAAZE00000002	five_prime_UTR	53897410	53897487	+
GWHAAZE00000002	CDS	53897488	53897758	+
GWHAAZE00000002	CDS	53898877	53899454	+
GWHAAZE00000002	CDS	53902050	53905191	+
GWHAAZE00000002	CDS	53906332	53906678	+

Transcript Sequence
>GWHTAAZE007842 AGGGTTTATTTTTTCCCCCAATTCTCAACTTTTTTTCACCTCACCACTCTTTCTAGAGTTTTCCCCTCTTCCTAAACCATGAACAGAGATATTCCTCCAAAATCATTCCCAAACACGCGGCGAGGTTCTGTTCCGGCGAATTTCCGGTCGGTTCGACAACCCTACCAGACTTCGTTCCGGCGAGGTCGTCCTCCCGGACCACCGCCAGGCTCCTTCAACCGCCACTGTCCTAACTTCATCATCGAGCTATCATCATACGATAAGAATGAGTGTGTTACGAAGGCTCACGTCCACTATTTAATCTCCAAGCTCAAGTGTAAACCTGATAATTTCAACGTTTACGAGAACGGTATAAATGTCGGTAGCTTGTTTTTCCAGCAGTGGCCAGAAGCACTTGAAACCCTAGTAGAATTGTGGGAAAATAGGCTTAATGGAATTCATATGTTGTTGCCTAGGCTAATACATAATCTGTTGGTGCCTTCGGATATAGAAGATGTTAAAGATCGGTTGAAAAAGCTATTTGTGGAGCATGTAAAGAGGTTGATTGAAGGTGATTTGGTGAAGAAGTGGGAGAAGAAGCTAGGGATTGTGTCCAGTGAAGTTCAAAAAGTTAAGTTGATGCTTGCAAAGCCTAAATCTGTGATTGGGTGGAATGAGCTTTTGACGAAGAAGAAAGGGCTTTCATCTGAGGAGGATTTGATTAAAAGGAGGTTGGAAGAATATGAGTCTGCTATGAAATGTATACTTTCTCATCTTGAAGGGAAGCAATTGGAGGATGAAGAAGAGGTGAAGGTGTTTAGATTTGGAAGAGATTTTGATTGGGTTAGGATTCACTTTTTGATGATGAGGGAGTGCCGAAGGCTTGATAATGGGTTGCCAATTTATGCCTTTAGGAGGGACATTCTAAGGCAAATACATGAACAACAGATAACGGTATTGATTGGAGAAACTGGTTCAGGAAAAAGTACACAGTTGGTTCAGTTCCTTGCTGATTCCAAAGTAGCTGGTGGTGAGTCTATTATATGCACGCAGCCCCGCAAGCTTGCGGCCATCTCATTGACCCAAAGGGTTAAAGAGGAAAGTTATGGGTGCCATCAAGATACTTCAATCATCTGTTATCCAACGTATTCATCCGATCAGTCATATGATTCTAAGGTTATATATATGACGGACCACTGCTTGCTGCAGTACTACATGAGTGACAAGAACTTATCCAAGATATCATGCATCATTGTTGACGAGGCACATGAAAGAAGCTTAAACACTGATCTCCTTGTAGCAGTCTTAAAGAAATTACTGCCCCAGAGACTTGATCTGAGGCTTATCATAATGTCTGCAACGGCTAATGCAAACCAGCTTTCTGACTACTTCTTTCGTTGCCAGACTCTCCATGTGGTGGGCAGAACTTTTCCGGTTGATACCAAGTATGCCCCTTGTGCATTGGAAGGCCCTTCGGCTTCCGACATTGTTGCTTCATATGTTTCAGATGTTGTGAGGATGGTAACTGAGATACATAGAATGGAGAGTGAAGGAACCATACTTGCATTCTTGACTTCTCAAATGGAAGTTGAGTGGGCTTGTGAAAAGTTTCAAGCTCCCTATGCAGTTGCATTACCTTTACATGGGAAACTTTCTCACGACGAGCAACTTCGCGTTTTCCATAGCTATCCTGGAAAAAGAAAAGTTATATTCACTACAAATCTTGCTGAGACGTCATTGACAATCCCGGGAGTCAAGTATGTGGTTGATTGTGGCATGGTGAAAGAGAGTCGGTTTGAACCTGGCACTGGTATGAGTGTTCTCAGAGTTTGTAGGATCAGTCAGAGTTCTGCTGAACAACGGGCAGGCCGTGCTGGTCGAACTGAACCTGGAAAGTGTTATAGACTTTACTCAGAACATGATTTTGAGTTGATGCCGCCTCATCCAGAACCTGAGATTCGTAAGGTTCATCTTGGTGTTGCAGTTCTTAGGATTCTTGCTTTGGGTATCAATGATATGCAAAATTTTGATTTTGTTGACGCACCCAGTGCTAAAGCTATTGAAATGGCCATTAGAAACCTTGTTCAGTTGGGAGCTGTTACACACAAAAATGATGCTTATGAATTAACGAAAGATGGTTGGGATTTGGTTAGGTTGGGCATTGAACCTCGTCTAGGAAAGATAATTCTTAGCTGCTTCCAACGACGTTTGGGTAGAGAGGGCCTCGTTCTGGCTGCTGTTATGGCTAATGCAAGTAGCATATTTTGCAGAGTTGGTACTGAAGAAGATAAGCGAAAATCTGATCGCTTTAAGGTTCAATTCTGCCACCACAACGGTGAACTCTTCACTTTGCTCTCTGTTTACAAGAAATGGGAAGATGTGCCTTATGACAAGAGGAATAAGTGGTGTTGGGACAATAGCATCAATGCAAAATCCATGCGGAGATGCCAGGAAATGGTGCAAGAACTAGATTTTTGTTTACAGAATGAACTTCGTGTTATTATTCCTAGTTATTGGCTTTGGAATCCAGAGGTGCATTCAGAGCATGACAATACTTTGAAAAATGTGATACTCTCTTCTCTTGCAGAAAATGTAGCTATGTACTCGGGATATGATCAGCTTGGTTATGAAGTGGCGTTGACGGGAAATCATGTTCAATTGCATCCTTCATGCTCTTTGCTGAACTTCAGTGAAAGACCAAGTTGGGTCGTCTTTGGTGAAATCCTTTCTGTATCTAAAGAATATTTGGTCTGTGTAACTGCTATCAATGTTGAGTGTTTGTATTCTCTTTGCCCTCCTCTCTTTGATGTCCCTAAGATGGAAAGTCGGAAGCTGCAACTAAGGGTTTTGACTGGTTTTGGTAGTACATTACTAAAAAAATTATGTGGGAAGTCAAACAATGGCCTTCTTCATCTCGTTTCACGCGCTAGAACTGCCTTTGAGGATGAAAGGATTGGTGTTGAAGTTAATGTTGACCGAAATGAAATTCTATTATTCGCCTCTTCCCAAGACATTGAAAGAGTCTGTAGTCTTGTAAATGATGCGTTGGAGCACGAGAGAAAATGGCTGGAAAATGAATGCCTGGAAAAATGCTTGTATCATGGTGGGCGTGGTGTCTCTCCTCCTATAGCTTTGTTTGGAGCTGGTGCCGAGATAAAGCATCTGGAGCTTAAAAATAGATATTTGACTGTTGATGTATCTCATTCAGATGTAAGTGCTATAGAAGATAAGGAGCTTTTGATGTTTTTGGAGAGAAGCACCTCTGGTTGTATTTGCGGAGTCCACAAGTTAATTGGAGTTCCACAAGAGGGTGAGGAGAAGGAAAAGTGGGGAAGAATAACATTTCATTCACCTGATGCTGCTAAGAAAGCCGCCGACAAGTTAAATCAAGTTGAATTCAATGGCGCCTCGCTGAAGGTGACTCCTTCAAAAAGCACATATGGAAGTGATCATAAGTTGTTTTCCTTTCCCGCTGTTAAAGCTAAACTATATTGGCCTCGTAAGTTCAGTAAGGGGGTTGCATTTGCGAAGTGTGCAAAGCAAGATGTTGCTTCTGTGGTTAATGATTTCTCAACGGTGCTAATAGGGGGGAAGTTTGTTCGGTGTGAACCTAGCGTGAAGTCAATGGATAGTGTTGTGATAGGTGGGCTTGATAGAGAACTCTCTGAGGCTGAAATTTTTGAGGTACTAAGGACTGCAACAGATAAGACAATCCTGGACTTCTTCCTGGTGAGAGGAAATGCTGTGGAAAATCCTCCATGTGATGACCTTGAAGAAGCACTTCTGAAAGAAATCTCCGCTTTTATGCCTAATCGAAATCTTCACAGGAACTATGTCCGTATTCAGGTCTTCCCACCAGAACCGAGAGATAATTTCGTGAGAGCATCAATTACGTTCGATGGAAGCCTGCATTTGGAGGCAGCAAAAGCTTTGGAGCAACTTGAAGGGAAAGTATTACCTGGATGTCTTTCTTGGCAGAAGATAAAGTGCCAGCAGCTGTTTCACAGCTATGTATCCTGCCCTTCACCTGTCTACAGTGTTATCAAAGAGCAACTGGATTCTTTACTTGGAAGGCTCCGCCATCGAAAGGGGGCCACAATTCTTCGGGTTTTCAGTATATCTGTAACCATAACAAGTGGTGTTAGAGCTTTCCTTCCTTCATGGCTGAAAGCACCAGACTCCAACTGTGGAAGAAATGTTGATGAAGCAGAACTGATGGAGATTACTGAGCAGTTGAAGACCATGACTGAAATCATTCAAAACCAAGGAGTTCAATATACTCAACAAGTTGCTAGCAGCAAAGACTGGGAGCATAGGATGGAGGAGAGATTTGGGAATGTAATGGAAGTAATCAATGAAAGATTGAGAGAGCAAAAGACTAAGAAATTCAAGGATCATCAAGTGTGGGGCAAGAGAATTCGCGTCTCCAACTTATAG

Network for GWHGAAZE007834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	275	426	8.60E-07
PF00271.32	Helicase_C	476	595	8.60E-15
PF04408.24	HA2	657	753	1.10E-08
PF07717.17	OB_NTP_bind	820	899	2.60E-11

Protein Sequence

>GWHPAAZE007838
MNRDIPPKSFPNTRRGSVPANFRSVRQPYQTSFRRGRPPGPPPGSFNRHCPNFIIELSSYDKNECVTKAHVHYLISKLKCKPDNFNVYENGINVGSLFFQQWPEALETLVELWENRLNGIHMLLPRLIHNLLVPSDIEDVKDRLKKLFVEHVKRLIEGDLVKKWEKKLGIVSSEVQKVKLMLAKPKSVIGWNELLTKKKGLSSEEDLIKRRLEEYESAMKCILSHLEGKQLEDEEEVKVFRFGRDFDWVRIHFLMMRECRRLDNGLPIYAFRRDILRQIHEQQITVLIGETGSGKSTQLVQFLADSKVAGGESIICTQPRKLAAISLTQRVKEESYGCHQDTSIICYPTYSSDQSYDSKVIYMTDHCLLQYYMSDKNLSKISCIIVDEAHERSLNTDLLVAVLKKLLPQRLDLRLIIMSATANANQLSDYFFRCQTLHVVGRTFPVDTKYAPCALEGPSASDIVASYVSDVVRMVTEIHRMESEGTILAFLTSQMEVEWACEKFQAPYAVALPLHGKLSHDEQLRVFHSYPGKRKVIFTTNLAETSLTIPGVKYVVDCGMVKESRFEPGTGMSVLRVCRISQSSAEQRAGRAGRTEPGKCYRLYSEHDFELMPPHPEPEIRKVHLGVAVLRILALGINDMQNFDFVDAPSAKAIEMAIRNLVQLGAVTHKNDAYELTKDGWDLVRLGIEPRLGKIILSCFQRRLGREGLVLAAVMANASSIFCRVGTEEDKRKSDRFKVQFCHHNGELFTLLSVYKKWEDVPYDKRNKWCWDNSINAKSMRRCQEMVQELDFCLQNELRVIIPSYWLWNPEVHSEHDNTLKNVILSSLAENVAMYSGYDQLGYEVALTGNHVQLHPSCSLLNFSERPSWVVFGEILSVSKEYLVCVTAINVECLYSLCPPLFDVPKMESRKLQLRVLTGFGSTLLKKLCGKSNNGLLHLVSRARTAFEDERIGVEVNVDRNEILLFASSQDIERVCSLVNDALEHERKWLENECLEKCLYHGGRGVSPPIALFGAGAEIKHLELKNRYLTVDVSHSDVSAIEDKELLMFLERSTSGCICGVHKLIGVPQEGEEKEKWGRITFHSPDAAKKAADKLNQVEFNGASLKVTPSKSTYGSDHKLFSFPAVKAKLYWPRKFSKGVAFAKCAKQDVASVVNDFSTVLIGGKFVRCEPSVKSMDSVVIGGLDRELSEAEIFEVLRTATDKTILDFFLVRGNAVENPPCDDLEEALLKEISAFMPNRNLHRNYVRIQVFPPEPRDNFVRASITFDGSLHLEAAKALEQLEGKVLPGCLSWQKIKCQQLFHSYVSCPSPVYSVIKEQLDSLLGRLRHRKGATILRVFSISVTITSGVRAFLPSWLKAPDSNCGRNVDEAELMEITEQLKTMTEIIQNQGVQYTQQVASSKDWEHRMEERFGNVMEVINERLREQKTKKFKDHQVWGKRIRVSNL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12818	DHX8, PRP22	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0004386	molecular_function	helicase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.438
	SRR3591706	second leaf	8.058
	SRR3591707	mature leaf	9.975
	SRR3591708	Shoot apex	11.660
	SRR3591709	Stem	18.722
	SRR3591710	White floral bud	13.698
	SRR3591711	White flower	14.846
	SRR3591712	Green floral bud	9.998
	SRR3591713	Yellow flower	9.971
SRP173429	SRR8316895	Juvenile bud stage	5.533
	SRR8316896	Juvenile bud stage	6.543
	SRR8316897	Juvenile bud stage	2.089
	SRR8316894	Third green stage	3.540
	SRR8316900	Third green stage	7.121
	SRR8316901	Third green stage	5.642
	SRR8316898	Complete white stage	2.518
	SRR8316899	Complete white stage	9.690
	SRR8316903	Complete white stage	6.496
	SRR8316902	Silver flowering stage	2.734
	SRR8316904	Silver flowering stage	6.742
	SRR8316905	Silver flowering stage	2.772
	SRR8316906	Gold flowering stage	7.769
	SRR8316907	Gold flowering stage	5.432
	SRR8316908	Gold flowering stage	7.242
SRP132670	SRR6706286	Control	6.132
	SRR6706287	Light intensity 50%	6.690
	SRR6706288	Light intensity 20%	6.482
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.125
	CNS0095593	Slightly white alabastrum(diploid) 2	1.767
	CNS0095594	Slightly white alabastrum(diploid) 3	2.721
	CNS0095595	Whole white alabastrum(diploid) 2	2.389
	CNS0095596	Whole white alabastrum(diploid) 3	1.741
	CNS0095597	Whole white alabastrum(diploid) 4	2.773
	CNS0095598	Silvery flower (diploied) 1	6.574
	CNS0095599	Silvery flower (diploied) 2	4.987
	CNS0095600	Silvery flower (diploied) 3	11.057
	CNS0095601	Golden flower (diploid) 1	4.650
	CNS0095602	Golden flower (diploid) 2	12.762
	CNS0095603	Golden flower (diploid) 3	12.695
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.380
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.439
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.727
	CNS0095610	Silvery flower (tetraploid) 1	10.204
	CNS0095611	Silvery flower (tetraploid) 2	13.184
	CNS0095612	Silvery flower (tetraploid) 3	9.788
	CNS0095613	Golden flower (tetraploid) 1	3.182
	CNS0095614	Golden flower (tetraploid) 2	8.482
	CNS0095615	Golden flower (tetraploid) 3	6.597
CRA001975	CRR073297	Stem 1	10.953
	CRR073298	Stem 2	9.056
	CRR073299	Stem 3	9.157
	CRR073300	Leaf 1	9.262
	CRR073301	Leaf 2	7.455
	CRR073302	Leaf 3	5.410
	CRR073303	Juvenile bud 1	5.464
	CRR073304	Juvenile bud 2	6.533
	CRR073305	Juvenile bud 3	10.744
	CRR073306	Third green 1	6.706
	CRR073307	Third green 2	3.956
	CRR073308	Third green 3	6.595
	CRR073309	Second white 1	4.413
	CRR073310	Second white 2	5.185
	CRR073311	Second white 3	7.384
	CRR073312	Silver flowering 1	5.674
	CRR073313	Silver flowering 2	5.770
	CRR073314	Silver flowering 3	4.967
	CRR073315	Gold flowering 1	6.316
	CRR073316	Gold flowering 2	9.918
	CRR073317	Gold flowering 3	8.979
	CRR073318	Tawny withering 1	6.470
	CRR073319	Tawny withering 2	4.715
	CRR073320	Tawny withering 3	5.413