Gene detail

Detail information of GWHGAAZE007808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635541.1	0	PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Vitis vinifera]
Swissprot	tr\|Q52QU2\|AIL6_ARATH	4E-169	AP2-like ethylene-responsive transcription factor AIL6
trEMBL	tr\|F6HRZ0\|F6HRZ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57449.1}
TAIR10	AT5G10510.2	1E-138	AINTEGUMENTA-like 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	53310145	53314815	-
GWHAAZE00000002	mRNA	53310145	53314815	-
GWHAAZE00000002	exon	53310145	53310593	-
GWHAAZE00000002	exon	53311223	53311299	-
GWHAAZE00000002	exon	53311415	53311465	-
GWHAAZE00000002	exon	53311549	53311622	-
GWHAAZE00000002	exon	53311960	53312048	-
GWHAAZE00000002	exon	53313789	53313871	-
GWHAAZE00000002	exon	53314277	53314815	-
GWHAAZE00000002	CDS	53314277	53314815	-
GWHAAZE00000002	CDS	53313789	53313871	-
GWHAAZE00000002	CDS	53311960	53312048	-
GWHAAZE00000002	CDS	53311549	53311622	-
GWHAAZE00000002	CDS	53311415	53311465	-
GWHAAZE00000002	CDS	53311223	53311299	-
GWHAAZE00000002	CDS	53310145	53310593	-

Transcript Sequence
>GWHTAAZE007816 ATGTATACAGGAGAAAATCAAGTCCAAGAAGTAGCAGGACAAAACATAGCAGATTCCTCCATCTTCACAACCTTCATCGATTCCCACATCAAGCAACAATCGGCTCCGAAGCTCGAGGACTTTCTCGGTGGTGACTCGGCTTCGCTCGTCCGATATTCTGACAGCCAAACAGAGACTCAGGACTCTGAGCTGACTCACATCTACGGGCAAAGCAACTCAGCTTACTTCAATGATCAACAAGATCTCAAAACTATTGCGGCTTTTCAAGCCTTTTCGACCAACTCCGGCTCTGAAGTTGATGACTCCGCTTCCGTGGCCCGGACTCAGCTGGGCTCAGCTGAGTTTGCTGGCCAGTGTTTCGAGTCGAGGAACGACTTGGCTTACTCGCAGTGTCCCACGGGTGCTTTGTCCCTTGGGGTTGATACTAATACTACTACTCATAGGTCGGAGAAGGCTATTGTTGCAGTGGAATCCGATAGTTGTAAGAAGATTGCTGATACGTTTGGGCAAAGAACTTCGATTTACAGAGGAGTTACTAGACATAGATGGACGGGAAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGCCAGGCCAGAAAAGGGCGTCAAGGTGGGTATGACAAGGAAGATAAGGCAGCAAGAGCTTATGACTTGGCGGCTTTGAAATACTGGGGTTCCTCTGCTACGACCAATTTTCCTGTATCAAATTATGCCAAAGAAGTGGAGGAGATGAAGAACGCAACTAAACAAGAATTTATTGCATCACTAAGAAGGAAAAGTAGCGGTTTCTCAAGGGGAGCATCTATCTACAGGGGTGTAACAAGGCATCATCAACAAGGTCGATGGCAAGCAAGGATTGGTCGTGTTGCAGGAAATAAAGATCTATATCTTGGTACATTTGCGACCGAGGAGGAAGCAGCAGAGGCATACGACATAGCCGCCATCAAATTTCGGGGTCTAAACGCAGTGACCAATTTTGAGATGAACAGATATGATGTCGAAGCCATTGCCAAGAGCGCGCTTCCCATTGGTGGGGGAGCAAAGCGCTTAAAGATATCCCTTGAGGCTGAGCAAAAACCGTCTTTAACCAACCACCACCAGCAGCTGCCCCAATGCAGCAGCGGCAACAGCATCAGTTTCGCCACCGCTCAGCCGGTTTCATCCATCCCCTATGGGGTCCCCTACGATTCAGCCATGGCGCTCTACCACCAACACAACCAGCAGCAGCTCTTCCACCACCTCCACTCTGGCAACGATGCTGGGTCTGATGCCTCGGGGGGCTGCGCTGAGCCTACTGCCACCACCAGCCGAGTTTTTCATCTGGCCCCACCAATCCTATTAGAAAAATGA

Network for GWHGAAZE007808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	174	229	1.80E-08
PF00847.21	AP2	273	323	1.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.077
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.165
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.072
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.038
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.092
	SRR8316896	Juvenile bud stage	0.049
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.025
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.187
	SRR8316903	Complete white stage	0.105
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.056
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.037
SRP132670	SRR6706286	Control	0.035
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.228
	CNS0095593	Slightly white alabastrum(diploid) 2	0.023
	CNS0095594	Slightly white alabastrum(diploid) 3	0.243
	CNS0095595	Whole white alabastrum(diploid) 2	0.222
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.167
	CNS0095598	Silvery flower (diploied) 1	0.103
	CNS0095599	Silvery flower (diploied) 2	0.152
	CNS0095600	Silvery flower (diploied) 3	0.171
	CNS0095601	Golden flower (diploid) 1	0.421
	CNS0095602	Golden flower (diploid) 2	0.210
	CNS0095603	Golden flower (diploid) 3	0.209
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.147
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.048
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.083
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.050
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.119
	CRR073311	Second white 3	0.046
	CRR073312	Silver flowering 1	0.564
	CRR073313	Silver flowering 2	0.483
	CRR073314	Silver flowering 3	0.480
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000