Detail information of GWHGAAZE007807


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01575.10unnamed protein product [Coffea canephora]
Swissprottr|Q8H1D6|RBK1_ARATH3E-166Receptor-like cytosolic serine/threonine-protein kinase RBK1
trEMBLtr|A0A068TZ45|A0A068TZ45_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01575.1}
TAIR10AT5G65530.14E-138Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5329550653300475+
GWHAAZE00000002mRNA5329550653300475+
GWHAAZE00000002exon5329550653295992+
GWHAAZE00000002exon5329816153298475+
GWHAAZE00000002exon5329907053299224+
GWHAAZE00000002exon5329934753299426+
GWHAAZE00000002exon5329967753299812+
GWHAAZE00000002exon5330006853300217+
GWHAAZE00000002exon5330031453300475+
GWHAAZE00000002CDS5329550653295992+
GWHAAZE00000002CDS5329816153298475+
GWHAAZE00000002CDS5329907053299224+
GWHAAZE00000002CDS5329934753299426+
GWHAAZE00000002CDS5329967753299812+
GWHAAZE00000002CDS5330006853300217+
GWHAAZE00000002CDS5330031453300475+
Transcript Sequence

Network for GWHGAAZE007807

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1634211.40E-36
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VI

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.193
SRR3591706second leaf1.997
SRR3591707mature leaf3.730
SRR3591708Shoot apex12.154
SRR3591709Stem11.068
SRR3591710White floral bud302.386
SRR3591711White flower23.012
SRR3591712Green floral bud228.433
SRR3591713Yellow flower10.407
SRP173429 SRR8316895Juvenile bud stage 6.731
SRR8316896Juvenile bud stage 27.772
SRR8316897Juvenile bud stage 12.276
SRR8316894Third green stage 16.124
SRR8316900Third green stage 97.870
SRR8316901Third green stage 97.057
SRR8316898Complete white stage 0.931
SRR8316899Complete white stage 7.379
SRR8316903Complete white stage 1.356
SRR8316902Silver flowering stage3.271
SRR8316904Silver flowering stage6.864
SRR8316905Silver flowering stage1.291
SRR8316906Gold flowering stage 3.995
SRR8316907Gold flowering stage 0.650
SRR8316908Gold flowering stage 1.594
SRP132670SRR6706286Control58.308
SRR6706287Light intensity 50%62.482
SRR6706288Light intensity 20%57.828
CNP0000432CNS0095592Slightly white alabastrum(diploid) 197.322
CNS0095593Slightly white alabastrum(diploid) 280.492
CNS0095594Slightly white alabastrum(diploid) 393.995
CNS0095595Whole white alabastrum(diploid) 2254.134
CNS0095596Whole white alabastrum(diploid) 3287.149
CNS0095597Whole white alabastrum(diploid) 4341.081
CNS0095598Silvery flower (diploied) 111.268
CNS0095599Silvery flower (diploied) 231.103
CNS0095600Silvery flower (diploied) 39.576
CNS0095601Golden flower (diploid) 110.712
CNS0095602Golden flower (diploid) 27.695
CNS0095603Golden flower (diploid) 37.390
CNS0095604Slightly white alabastrum(tetraploid) 1183.788
CNS0095605Slightly white alabastrum(tetraploid) 2211.283
CNS0095606Slightly white alabastrum(tetraploid) 310.559
CNS0095607Whole white alabastrum(tetraploid) 1414.950
CNS0095608Whole white alabastrum(tetraploid) 2475.145
CNS0095609Whole white alabastrum(tetraploid) 3213.294
CNS0095610Silvery flower (tetraploid) 110.137
CNS0095611Silvery flower (tetraploid) 225.725
CNS0095612Silvery flower (tetraploid) 363.643
CNS0095613Golden flower (tetraploid) 19.453
CNS0095614Golden flower (tetraploid) 26.357
CNS0095615Golden flower (tetraploid) 329.096
CRA001975CRR073297Stem 117.454
CRR073298Stem 215.810
CRR073299Stem 36.847
CRR073300Leaf 185.077
CRR073301Leaf 245.745
CRR073302Leaf 320.397
CRR073303Juvenile bud 159.142
CRR073304Juvenile bud 233.416
CRR073305Juvenile bud 38.220
CRR073306Third green 123.019
CRR073307Third green 225.016
CRR073308Third green 325.483
CRR073309Second white 11.292
CRR073310Second white 27.300
CRR073311Second white 36.134
CRR073312Silver flowering 131.014
CRR073313Silver flowering 229.099
CRR073314Silver flowering 317.340
CRR073315Gold flowering 120.899
CRR073316Gold flowering 213.186
CRR073317Gold flowering 36.876
CRR073318Tawny withering 137.101
CRR073319Tawny withering 237.158
CRR073320Tawny withering 331.824