Gene detail

Detail information of GWHGAAZE007762

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002531922.1	Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
Swissprot	tr\|Q9C7U5\|E132_ARATH	Glucan endo-1,3-beta-glucosidase 2 (Precursor)
trEMBL	tr\|B9T103\|B9T103_RICCO	Glucan endo-1,3-beta-glucosidase, putative {ECO:0000313\|EMBL:EEF30466.1}
TAIR10	AT1G66250.1	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	52093693	52098275	+
GWHAAZE00000002	mRNA	52093693	52098275	+
GWHAAZE00000002	exon	52093693	52093895	+
GWHAAZE00000002	exon	52095812	52097035	+
GWHAAZE00000002	exon	52097175	52097205	+
GWHAAZE00000002	exon	52098041	52098158	+
GWHAAZE00000002	exon	52098255	52098275	+
GWHAAZE00000002	five_prime_UTR	52093693	52093831	+
GWHAAZE00000002	CDS	52093832	52093895	+
GWHAAZE00000002	CDS	52095812	52097035	+
GWHAAZE00000002	CDS	52097175	52097205	+
GWHAAZE00000002	CDS	52098041	52098158	+
GWHAAZE00000002	CDS	52098255	52098275	+

Transcript Sequence
>GWHTAAZE007770 TATATACCCTTCTCTTTGCCATTCCCTCATTCTGTTATTCTTCTTCTTCAAAAATTAATTATTTCACTGCCTCATTTTCATTAATTCTTCTCTATAGATTTTGGCATCAAAATTTCTTTTATTGAGGGAGTTGTTTTCAATGGAATTTCTTGTTTTTCTTCTTCTTATTTTAGGAGTATCTGCTGTCTCTGCTTCTAATGAAGATCCATTCATTGGTGTGAATATAGGCACAGACCTCTCAGACATGCCACACCCAACCCAAGTAGTAGCCCTCCTCAAAGCCCAACAGATCCGCCACATCCGCCTGTACAACGCGGACCGAGCCATGCTATTAGCCTTAGCCAACACCGGCATTCTGGTCACCATCACGGTCCCCAATGACCAACTCCTTGGTGTTGGCCAATCAAACTCCACCGCCGCCAATTGGGTGTCCCAAAACATCGTGGCCCACTACCCTGCAACCAACATAACCACTGTTTGTGTCGGCTCTGAGGTCCTAAATACCCTTCCCAATGCTGCTCCGGTACTTATAAACGCCCTCAAATTCGTCCACTCAGCCCTAGTTGCCTCAAATCTTGACCGCCAAATCAAAGTCACTACTCCCCTTTCATCCACCATTATTTTGGACTCTTTCCCCCCATCGCAAGCATTTTTCAACCATTCTTTAAATCCCATTTTAGTACCTATGTTGTACTTTTTACAATCAACGGGCTCATTTCTGACTCTTAATATATACCCTTACTACGACTATATGCAGTCGAATGGCGTCATTCCTTTGGATTACGCGCTTTTTAAGCCCTTACCGGCAAACAAAGAAGCCGTGGATTCTAACACACTTCTCCACTATTCGAACGTGTTTGATGCAATGGTTGATGCGGCTTACTTCGCTATGGCTTTCCTTAACTTCACTAACGTACCTGTGGTGGTGACCGAGTCAGGCTGGCCTTCAAAAGGAGACTCGAACGAGCCCGATGCAACTCTAGACAATGCTAACACTTACAATAGCAACTTGATAAGGCATGTTTTGAACAAAACTGGGACCCCCAAACACCCGGGGATTGCGGTTAGTACTTACATTTACGAGCTTTATAATGAGGACCTGAAGGCTGGGCCCGTTTCGGAGAAGAACTGGGGATTGTTTGATGCCAATGGGGCGCCTATTTATACATTGAGATTGACAGGGTCGGGTTCGGTTTTGGCAAATGATACTTCAAACCGGACTTTTTGTACGGCTAGGGATGGGGCGGACCCGAAAATGCTGCAGGCGGCTTTGGATTGGGCTTGTGGGCCCGGGAAGGTGGATTGTTCAGCCATGTTGCAGGGTGGTCCATGCTATGACCCGGATAACGTGGCTGCACATGCGACTTATGCTTTTGATGCTTATTATCAGCTCATGGGGAGGGCTCCTGGGACTTGTGACTTCAATGGTCATGGTTCTTGCGTGTTTCTTGGAAGGGGTGTTGACAAGAATTTAACTTCCCTAAATGGTACAGCCGTGCCCACGAACTTGACGAGCTCAGCAGCCTGGCCTCTTAGTGGCTACAGATATGGCAGCAGTGTCTTTGCAAGCGCCGCGACCTCCGTTGGAGAATTTTGA

Network for GWHGAAZE007762

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	25	344	7.70E-78
PF07983.14	X8	362	432	1.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19891	GN1_2_3	Metabolic pathways	map01100
K19891	GN1_2_3	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.184
	SRR3591706	second leaf	6.369
	SRR3591707	mature leaf	0.649
	SRR3591708	Shoot apex	29.480
	SRR3591709	Stem	8.832
	SRR3591710	White floral bud	1.637
	SRR3591711	White flower	2.142
	SRR3591712	Green floral bud	5.388
	SRR3591713	Yellow flower	0.124
SRP173429	SRR8316895	Juvenile bud stage	10.978
	SRR8316896	Juvenile bud stage	8.783
	SRR8316897	Juvenile bud stage	6.650
	SRR8316894	Third green stage	3.792
	SRR8316900	Third green stage	7.171
	SRR8316901	Third green stage	7.777
	SRR8316898	Complete white stage	0.067
	SRR8316899	Complete white stage	5.449
	SRR8316903	Complete white stage	0.907
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	10.261
	SRR6706287	Light intensity 50%	8.942
	SRR6706288	Light intensity 20%	10.987
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.240
	CNS0095593	Slightly white alabastrum(diploid) 2	8.744
	CNS0095594	Slightly white alabastrum(diploid) 3	6.126
	CNS0095595	Whole white alabastrum(diploid) 2	4.143
	CNS0095596	Whole white alabastrum(diploid) 3	2.081
	CNS0095597	Whole white alabastrum(diploid) 4	2.625
	CNS0095598	Silvery flower (diploied) 1	9.600
	CNS0095599	Silvery flower (diploied) 2	6.090
	CNS0095600	Silvery flower (diploied) 3	1.642
	CNS0095601	Golden flower (diploid) 1	4.366
	CNS0095602	Golden flower (diploid) 2	2.676
	CNS0095603	Golden flower (diploid) 3	2.388
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.094
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.677
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.476
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.202
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.704
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.717
	CNS0095610	Silvery flower (tetraploid) 1	0.234
	CNS0095611	Silvery flower (tetraploid) 2	1.360
	CNS0095612	Silvery flower (tetraploid) 3	0.481
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.087
	CNS0095615	Golden flower (tetraploid) 3	0.059
CRA001975	CRR073297	Stem 1	22.969
	CRR073298	Stem 2	19.587
	CRR073299	Stem 3	24.021
	CRR073300	Leaf 1	13.326
	CRR073301	Leaf 2	12.582
	CRR073302	Leaf 3	11.032
	CRR073303	Juvenile bud 1	4.954
	CRR073304	Juvenile bud 2	2.015
	CRR073305	Juvenile bud 3	10.612
	CRR073306	Third green 1	0.053
	CRR073307	Third green 2	0.033
	CRR073308	Third green 3	0.230
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.112
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.023
	CRR073315	Gold flowering 1	0.861
	CRR073316	Gold flowering 2	1.583
	CRR073317	Gold flowering 3	1.965
	CRR073318	Tawny withering 1	6.859
	CRR073319	Tawny withering 2	4.351
	CRR073320	Tawny withering 3	9.691