Detail information of GWHGAAZE007758


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN68162.10hypothetical protein VITISV_015673 [Vitis vinifera]
Swissprottr|P51118|GLNA1_VITVI0Glutamine synthetase cytosolic isozyme 1
trEMBLtr|A5BPH7|A5BPH7_VITVI0Glutamine synthetase {ECO:0000256|RuleBase:RU004356}
TAIR10AT1G66200.10glutamine synthase clone F11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5198205951987619-
GWHAAZE00000002mRNA5198205951987619-
GWHAAZE00000002exon5198205951982211-
GWHAAZE00000002exon5198264451982803-
GWHAAZE00000002exon5198292451982961-
GWHAAZE00000002exon5198308451983137-
GWHAAZE00000002exon5198325951983333-
GWHAAZE00000002exon5198346551983593-
GWHAAZE00000002exon5198469951984786-
GWHAAZE00000002exon5198491651985022-
GWHAAZE00000002exon5198512151985169-
GWHAAZE00000002exon5198527751985380-
GWHAAZE00000002exon5198577151985810-
GWHAAZE00000002exon5198754651987619-
GWHAAZE00000002CDS5198754651987619-
GWHAAZE00000002CDS5198577151985810-
GWHAAZE00000002CDS5198527751985380-
GWHAAZE00000002CDS5198512151985169-
GWHAAZE00000002CDS5198491651985022-
GWHAAZE00000002CDS5198469951984786-
GWHAAZE00000002CDS5198346551983593-
GWHAAZE00000002CDS5198325951983333-
GWHAAZE00000002CDS5198308451983137-
GWHAAZE00000002CDS5198292451982961-
GWHAAZE00000002CDS5198264451982803-
GWHAAZE00000002CDS5198205951982211-
Transcript Sequence

Network for GWHGAAZE007758

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03951.20Gln-synt_N22972.10E-10
PF00120.25Gln-synt_C1682546.80E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01915glnA, GLUL Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Two-component systemmap02020
Necroptosismap04217
Glutamatergic synapsemap04724
GABAergic synapsemap04727

Gene Ontology

GO term OntologyName
GO:0006807biological_processnitrogen compound metabolic process
GO:0006542biological_processglutamine biosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0004356molecular_functionglutamate-ammonia ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf424.700
SRR3591706second leaf348.874
SRR3591707mature leaf466.155
SRR3591708Shoot apex280.111
SRR3591709Stem502.132
SRR3591710White floral bud226.010
SRR3591711White flower1691.873
SRR3591712Green floral bud74.926
SRR3591713Yellow flower4116.043
SRP173429 SRR8316895Juvenile bud stage 144.764
SRR8316896Juvenile bud stage 160.430
SRR8316897Juvenile bud stage 56.398
SRR8316894Third green stage 60.610
SRR8316900Third green stage 168.675
SRR8316901Third green stage 168.761
SRR8316898Complete white stage 171.580
SRR8316899Complete white stage 253.387
SRR8316903Complete white stage 220.308
SRR8316902Silver flowering stage471.961
SRR8316904Silver flowering stage630.096
SRR8316905Silver flowering stage401.053
SRR8316906Gold flowering stage 1532.165
SRR8316907Gold flowering stage 1397.678
SRR8316908Gold flowering stage 1877.053
SRP132670SRR6706286Control265.013
SRR6706287Light intensity 50%248.944
SRR6706288Light intensity 20%247.843
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1179.106
CNS0095593Slightly white alabastrum(diploid) 2161.513
CNS0095594Slightly white alabastrum(diploid) 3149.693
CNS0095595Whole white alabastrum(diploid) 2124.298
CNS0095596Whole white alabastrum(diploid) 3127.052
CNS0095597Whole white alabastrum(diploid) 4123.980
CNS0095598Silvery flower (diploied) 1304.609
CNS0095599Silvery flower (diploied) 2347.889
CNS0095600Silvery flower (diploied) 3783.387
CNS0095601Golden flower (diploid) 1358.779
CNS0095602Golden flower (diploid) 2841.703
CNS0095603Golden flower (diploid) 3804.619
CNS0095604Slightly white alabastrum(tetraploid) 1126.753
CNS0095605Slightly white alabastrum(tetraploid) 2139.267
CNS0095606Slightly white alabastrum(tetraploid) 3220.979
CNS0095607Whole white alabastrum(tetraploid) 176.381
CNS0095608Whole white alabastrum(tetraploid) 269.186
CNS0095609Whole white alabastrum(tetraploid) 3164.301
CNS0095610Silvery flower (tetraploid) 1819.662
CNS0095611Silvery flower (tetraploid) 2509.984
CNS0095612Silvery flower (tetraploid) 3545.517
CNS0095613Golden flower (tetraploid) 1761.604
CNS0095614Golden flower (tetraploid) 2945.638
CNS0095615Golden flower (tetraploid) 3589.212
CRA001975CRR073297Stem 1186.995
CRR073298Stem 2163.831
CRR073299Stem 3275.863
CRR073300Leaf 1164.588
CRR073301Leaf 2147.443
CRR073302Leaf 3181.771
CRR073303Juvenile bud 1294.595
CRR073304Juvenile bud 2360.353
CRR073305Juvenile bud 3259.775
CRR073306Third green 1665.637
CRR073307Third green 21033.784
CRR073308Third green 3723.412
CRR073309Second white 1938.527
CRR073310Second white 2546.199
CRR073311Second white 3538.849
CRR073312Silver flowering 1903.755
CRR073313Silver flowering 21055.377
CRR073314Silver flowering 31108.710
CRR073315Gold flowering 1717.207
CRR073316Gold flowering 2796.251
CRR073317Gold flowering 3744.845
CRR073318Tawny withering 1479.394
CRR073319Tawny withering 2489.459
CRR073320Tawny withering 3390.042