Detail information of GWHGAAZE007751


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275317.10NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial precursor [Solanum tuberosum]
Swissprottr|Q43644|NDUS1_SOLTU0NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (Precursor)
trEMBLtr|A0A0A0L910|A0A0A0L910_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN57464.1}
TAIR10AT5G37510.10NADH-ubiquinone dehydrogenase, mitochondrial, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5177930151788535-
GWHAAZE00000002mRNA5177930151788535-
GWHAAZE00000002exon5177930151779663-
GWHAAZE00000002exon5177977451780199-
GWHAAZE00000002exon5178185551782229-
GWHAAZE00000002exon5178403451784370-
GWHAAZE00000002exon5178575651786002-
GWHAAZE00000002exon5178812451788535-
GWHAAZE00000002CDS5178812451788535-
GWHAAZE00000002CDS5178575651786002-
GWHAAZE00000002CDS5178403451784370-
GWHAAZE00000002CDS5178185551782229-
GWHAAZE00000002CDS5177977451780199-
GWHAAZE00000002CDS5177930151779663-
Transcript Sequence

Network for GWHGAAZE007751

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0038map00190 Oxidative phosphorylation
map04714 Thermogenesis
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) GOslim:cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) GOslim:cellular_component
GO:0006754 ATP biosynthetic process GOslim:biological_process
GO:0042773 ATP synthesis coupled electron transport GOslim:biological_process
GO:0046034 ATP metabolic process GOslim:biological_process
GO:1902600 proton transmembrane transport GOslim:biological_process
GO:0015986 ATP synthesis coupled proton transport GOslim:biological_process
map04723 Retrograde endocannabinoid signaling
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism GOslim:molecular_function
GO:0008137 NADH dehydrogenase (ubiquinone) activity GOslim:molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H GOslim:molecular_function
GO:0004222 metalloendopeptidase activity GOslim:molecular_function
GO:0051536 iron-sulfur cluster binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13510.7Fer2_4701462.80E-18
PF10588.10NADH-G_4Fe-4S_31521891.80E-15
PF00384.23Molybdopterin3535735.10E-42
PF00384.23Molybdopterin5996356.10E-07
PF09326.12NADH_dhqG_C6777111.70E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03934NDUFS1 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0042773biological_processATP synthesis coupled electron transport
GO:0055114biological_processoxidation-reduction process
GO:0016020cellular_componentmembrane
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
GO:0051536molecular_functioniron-sulfur cluster binding
GO:0009055molecular_functionelectron transfer activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE007751.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf95.208
SRR3591706second leaf65.669
SRR3591707mature leaf57.620
SRR3591708Shoot apex75.271
SRR3591709Stem69.869
SRR3591710White floral bud81.039
SRR3591711White flower101.007
SRR3591712Green floral bud95.560
SRR3591713Yellow flower76.554
SRP173429 SRR8316895Juvenile bud stage 61.251
SRR8316896Juvenile bud stage 99.312
SRR8316897Juvenile bud stage 45.913
SRR8316894Third green stage 39.359
SRR8316900Third green stage 127.404
SRR8316901Third green stage 125.763
SRR8316898Complete white stage 47.610
SRR8316899Complete white stage 115.747
SRR8316903Complete white stage 68.516
SRR8316902Silver flowering stage44.742
SRR8316904Silver flowering stage55.474
SRR8316905Silver flowering stage27.249
SRR8316906Gold flowering stage 105.355
SRR8316907Gold flowering stage 98.886
SRR8316908Gold flowering stage 119.939
SRP132670SRR6706286Control90.429
SRR6706287Light intensity 50%93.815
SRR6706288Light intensity 20%96.341
CNP0000432CNS0095592Slightly white alabastrum(diploid) 157.250
CNS0095593Slightly white alabastrum(diploid) 257.884
CNS0095594Slightly white alabastrum(diploid) 360.003
CNS0095595Whole white alabastrum(diploid) 257.301
CNS0095596Whole white alabastrum(diploid) 361.938
CNS0095597Whole white alabastrum(diploid) 446.750
CNS0095598Silvery flower (diploied) 157.764
CNS0095599Silvery flower (diploied) 249.749
CNS0095600Silvery flower (diploied) 3124.332
CNS0095601Golden flower (diploid) 141.794
CNS0095602Golden flower (diploid) 2105.679
CNS0095603Golden flower (diploid) 3102.586
CNS0095604Slightly white alabastrum(tetraploid) 185.685
CNS0095605Slightly white alabastrum(tetraploid) 267.098
CNS0095606Slightly white alabastrum(tetraploid) 3125.203
CNS0095607Whole white alabastrum(tetraploid) 160.173
CNS0095608Whole white alabastrum(tetraploid) 257.039
CNS0095609Whole white alabastrum(tetraploid) 3122.323
CNS0095610Silvery flower (tetraploid) 1131.073
CNS0095611Silvery flower (tetraploid) 2132.259
CNS0095612Silvery flower (tetraploid) 3108.203
CNS0095613Golden flower (tetraploid) 155.276
CNS0095614Golden flower (tetraploid) 2104.422
CNS0095615Golden flower (tetraploid) 371.247
CRA001975CRR073297Stem 1112.353
CRR073298Stem 2106.088
CRR073299Stem 3131.270
CRR073300Leaf 1140.684
CRR073301Leaf 2132.988
CRR073302Leaf 3148.018
CRR073303Juvenile bud 1152.562
CRR073304Juvenile bud 2139.651
CRR073305Juvenile bud 3187.366
CRR073306Third green 170.441
CRR073307Third green 262.761
CRR073308Third green 367.515
CRR073309Second white 1129.477
CRR073310Second white 284.674
CRR073311Second white 384.541
CRR073312Silver flowering 174.171
CRR073313Silver flowering 2104.469
CRR073314Silver flowering 380.972
CRR073315Gold flowering 167.372
CRR073316Gold flowering 285.131
CRR073317Gold flowering 395.759
CRR073318Tawny withering 182.521
CRR073319Tawny withering 267.648
CRR073320Tawny withering 375.420