Gene detail

Detail information of GWHGAAZE007743

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011099938.1	PREDICTED: probable receptor protein kinase TMK1 [Sesamum indicum]
Swissprot	tr\|P43298\|TMK1_ARATH	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|F6HHZ7\|F6HHZ7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51844.1}
TAIR10	AT2G01820.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51527431	51530818	+
GWHAAZE00000002	mRNA	51527431	51530818	+
GWHAAZE00000002	exon	51527431	51529759	+
GWHAAZE00000002	exon	51530289	51530818	+
GWHAAZE00000002	CDS	51527431	51529759	+
GWHAAZE00000002	CDS	51530289	51530818	+

Transcript Sequence
>GWHTAAZE007751 ATGAGAACCCATAATGGGTTCAAGATTTTAGCTTTAGCTTTCTTTCTTGCTGGGTTCTGCACAGTTTTCACATTTGTGGACTCTCAAGCAAACCCTAGTGAAAATGATGCCTCAGTAATGTTATCTCTCAAGAAAACCGTCAGCTCACCTATCAACCTTCAATGGTCTGACCCGGATCCGTGCAAGTGGAAACATGTGGTCTGCTCAGAGGAAAAACGGGTCACCCGGATTCAAATTGGGCACAATAATCTGCAAGGTACACTTCCCACAAATCTTTCTGTTCTTACACAATTGGAGCGCTTAGAGCTTCAATGGAACAACATTTCCGGTCCTTTGCCTAGTTTAAGTGGGTTAAGTTCTTTACAAGTGTTGATGCTTAGTAACAATTTGTTCACTTCATTGCCTATTGATTTCTTTAATGGAATGTCTTCACTTCAATCTGTTGAGATTGATAATAACCCCTTTTCGGCCTGGGAAATACCCGAATCTTTGAAAAATGCATCCACATTGCAAAATTTCTCGGCAAATTCGGTTAATATTACCGGGAAAATCCCGGGTTTTCTTGGCCCGGATGGGTTCCCAAGTTTGGTTAATTTGCACTTGGCTTTGAATGATTTGGAGGGTGAATTGCCTGCGAGTTTTAGGGGTTCGATAATAGAGTCATTGTGGGTTAATGGGCAGAGAAGTAAAATGACTGGTGGAATTGATGTTATAAAGAACATGACTTTCTTGAAGGAGGTTTGGTTGCACTCAAATTCGTTTTCAGGTCCACTGCCCGATTTTTCGGGTTTGAAGAACTTGGAGAGCTTGAGCCTTAGAGATAATTCATTTACTGGCCCTGTTCCAATTTCTTTGGTTAATCTTGAATCTTTGAAAGTTGTTAATTTGACTAATAATTTGCTTCAAGGGCCAATGCCTGAGTTTAAAAGCTCGGTTAAAGTGGACATGACAAAGAAAACTAATAGCTTTTGTTTGGACCAGCCTGGGAATTGTGATTCCAGGGTGAGTTCATTGCTTTCCATTGTGAAATCAATGGGTTACCCTTTGAAATTTGGAGAGAATTGGAAGGGGAATGATCCGTGTGCAGATTGGTTCGGGATTGCTTGTAACAATGGCAACATTACTATTGTTAATTTCCAAAAATTGGGGCTTACGGGTACGATTTCCCCTGATTTTGCTACTCTCAAATCACTTCAAAGACTGGTTCTTGCCGATAATAAACTCACCGGGACGATACCCGAAGAACTTACAACTCTGCCTGCACTTAATGAATTAGACGTTTCAAATAACAATCTTCATGGGAAAGTGCCAGCATTTAAGAGTAATTTGATGCTGCATACAAATGGGAACCCGAACATAGGGAAGGAGAATATTGATCCAAATTCGCAGGGCACTAATCCTTCAAACACATCTAGTTCATCGAGGTCTGGAAATGGTGGAACCTCCAAAAATGGGGGTAAGAAGTCGAAGAATAAGACTGCAGTTGTAGTGGTTTCTGTCATCGGTGGCATTTTCGTGATTCTCTTGATTGGTTTAGGGGCTTTTTGTCTATACAAAAGTAGGCAAAAGCGGTTTAGCCGAGTACAAAGCCCCAATGCCATGGTGATACATCCTCGCTATTCGGGTTCAGATAATGAGAGCGTGAAGATCACTGTTGCAGGCTCGAGTGTCAGTGTGGGTGCACTTAGCGAAACCCACACTATCCCCAACAGCGAACAGACTGACAACATTCAAATGGTCGAGGCGGGTAATATGGTCATTTCCATTCAAGTCCTTAGAAATGTGACAAACAATTTCGCCGAAGAAAATATATTGGGGCAAGGAGGCTTTGGCACGGTCTACAAGGGGGAATTACACGATGGAACGAAGATTGCTGTAAAGAGAATGGAATCTGGTGTGATTGCCGGTAAAGGGCTGGCCGAATTCAAATCCGAGATTGTTGTTTTGACAAAAGTTAGGCATAGGCATCTTGTTGCTCTTCTTGGGTACTGTTTGGATGGGAACGAAAAGCTACTTGTGTATGAGTATATGCCTCAAGGGACCCTTAGTATGCATCTTTTTAACTGGGCTCACGATGGGCTGAAGCCGTTGGAGTGGACTCGAAGGTTGACCATTGCCTTGGACGTGGCGAGGGGGGTCGAATATCTTCATGGTTTAGCCCATCAAAGCTTTATTCATAGAGATTTAAAGCCCTCCAACATTCTTCTTGGGGATGATATGAGAGCTAAGGTCTCGGATTTTGGGCTCGTTCGACTTGCACCCGAAGGAAAAGGCTCCATCGAAACGAGAATCGCTGGTACTTTCGGATATCTTGCACCAGAATATGCAGTTACGGGTCGAGTCACTACTAAAGTTGACGTCTTCAGCTTCGGCGTGATCCTCATGGAGCTAATCACGGGGCGAAAAGCACTGGACGAAAGCCAACCTGAGGAGAGCATGCACCTAGTAACATGGTTCCGAAGAATGAACCTCAACAAAGAGACCTTCCATAAGGCCATTGATCCTACGATCGATATCAACGAGGAATCATTAGCAAGCATCAGCACTGTTGCTGAACTTGCAGGCCATTGCTGTGCTAGAGAGCCTTACCAACGGCCTGATATGGGCCATGCCGTTAATGTGCTATCATCACTCGTCGAAATTTGGAAACCATCAGATCAAAGCTCCGATGATATTTATGGGATCGATCTCGAAATGTCCTTGCCACAAGCTCTTAAAAAATGGCAAGCCTTTGAAGGTGCTAGTAATATGGATTCTTCATCGTCTTCATTCTTCCCGAGTTTGGATAATACGCAGACGAGCATACCGAATCGGCCCTATGGATTTGCGGAATCGTTCACGTCCGCAGATGGACGGTGA

Network for GWHGAAZE007743

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	69	0.00015
PF08263.13	LRRNT_2	335	370	0.0012
PF13855.7	LRR_8	392	432	2.30E-06
PF00069.26	Pkinase	600	873	1.00E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.013
	SRR3591706	second leaf	23.906
	SRR3591707	mature leaf	4.133
	SRR3591708	Shoot apex	39.051
	SRR3591709	Stem	7.299
	SRR3591710	White floral bud	28.040
	SRR3591711	White flower	8.772
	SRR3591712	Green floral bud	24.876
	SRR3591713	Yellow flower	1.154
SRP173429	SRR8316895	Juvenile bud stage	17.357
	SRR8316896	Juvenile bud stage	18.086
	SRR8316897	Juvenile bud stage	8.026
	SRR8316894	Third green stage	8.423
	SRR8316900	Third green stage	15.992
	SRR8316901	Third green stage	17.916
	SRR8316898	Complete white stage	10.470
	SRR8316899	Complete white stage	31.580
	SRR8316903	Complete white stage	23.397
	SRR8316902	Silver flowering stage	3.707
	SRR8316904	Silver flowering stage	5.348
	SRR8316905	Silver flowering stage	2.590
	SRR8316906	Gold flowering stage	3.290
	SRR8316907	Gold flowering stage	2.894
	SRR8316908	Gold flowering stage	3.037
SRP132670	SRR6706286	Control	20.631
	SRR6706287	Light intensity 50%	26.672
	SRR6706288	Light intensity 20%	27.310
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.264
	CNS0095593	Slightly white alabastrum(diploid) 2	19.551
	CNS0095594	Slightly white alabastrum(diploid) 3	11.876
	CNS0095595	Whole white alabastrum(diploid) 2	10.960
	CNS0095596	Whole white alabastrum(diploid) 3	12.198
	CNS0095597	Whole white alabastrum(diploid) 4	8.853
	CNS0095598	Silvery flower (diploied) 1	11.688
	CNS0095599	Silvery flower (diploied) 2	8.868
	CNS0095600	Silvery flower (diploied) 3	8.438
	CNS0095601	Golden flower (diploid) 1	10.315
	CNS0095602	Golden flower (diploid) 2	7.485
	CNS0095603	Golden flower (diploid) 3	6.700
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.717
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.700
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.344
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.504
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.731
	CNS0095610	Silvery flower (tetraploid) 1	9.631
	CNS0095611	Silvery flower (tetraploid) 2	9.451
	CNS0095612	Silvery flower (tetraploid) 3	8.649
	CNS0095613	Golden flower (tetraploid) 1	1.120
	CNS0095614	Golden flower (tetraploid) 2	5.264
	CNS0095615	Golden flower (tetraploid) 3	6.860
CRA001975	CRR073297	Stem 1	42.547
	CRR073298	Stem 2	43.315
	CRR073299	Stem 3	51.645
	CRR073300	Leaf 1	38.056
	CRR073301	Leaf 2	37.057
	CRR073302	Leaf 3	32.487
	CRR073303	Juvenile bud 1	31.151
	CRR073304	Juvenile bud 2	44.111
	CRR073305	Juvenile bud 3	46.501
	CRR073306	Third green 1	25.190
	CRR073307	Third green 2	33.540
	CRR073308	Third green 3	33.116
	CRR073309	Second white 1	1.734
	CRR073310	Second white 2	1.753
	CRR073311	Second white 3	1.083
	CRR073312	Silver flowering 1	0.683
	CRR073313	Silver flowering 2	0.430
	CRR073314	Silver flowering 3	0.329
	CRR073315	Gold flowering 1	12.211
	CRR073316	Gold flowering 2	12.620
	CRR073317	Gold flowering 3	22.559
	CRR073318	Tawny withering 1	11.302
	CRR073319	Tawny withering 2	8.652
	CRR073320	Tawny withering 3	15.989