Detail information of GWHGAAZE007734


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP26015.11.3503E-151hypothetical protein JCGZ_21048 [Jatropha curcas]
trEMBLtr|A0A067K178|A0A067K178_JATCU5E-152Uncharacterized protein {ECO:0000313|EMBL:KDP26015.1}
TAIR10AT5G37370.11E-113PRP38 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5135787551364282-
GWHAAZE00000002mRNA5135787551364282-
GWHAAZE00000002exon5136400151364282-
GWHAAZE00000002exon5136290251362982-
GWHAAZE00000002exon5136171751361788-
GWHAAZE00000002exon5135836051358627-
GWHAAZE00000002exon5135787551358050-
GWHAAZE00000002CDS5136400151364282-
GWHAAZE00000002CDS5136290251362982-
GWHAAZE00000002CDS5136171751361788-
GWHAAZE00000002CDS5135836051358627-
GWHAAZE00000002CDS5135787551358050-
Transcript Sequence

Network for GWHGAAZE007734

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03371.16PRP38111595.90E-50
PF12871.8PRP38_assoc1752797.00E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12850PRPF38B Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.088
SRR3591706second leaf32.809
SRR3591707mature leaf33.063
SRR3591708Shoot apex55.679
SRR3591709Stem46.147
SRR3591710White floral bud69.081
SRR3591711White flower70.785
SRR3591712Green floral bud64.069
SRR3591713Yellow flower68.352
SRP173429 SRR8316895Juvenile bud stage 31.831
SRR8316896Juvenile bud stage 37.927
SRR8316897Juvenile bud stage 19.822
SRR8316894Third green stage 16.751
SRR8316900Third green stage 51.440
SRR8316901Third green stage 53.882
SRR8316898Complete white stage 25.334
SRR8316899Complete white stage 84.740
SRR8316903Complete white stage 41.609
SRR8316902Silver flowering stage24.361
SRR8316904Silver flowering stage33.040
SRR8316905Silver flowering stage17.430
SRR8316906Gold flowering stage 61.797
SRR8316907Gold flowering stage 61.689
SRR8316908Gold flowering stage 60.644
SRP132670SRR6706286Control77.134
SRR6706287Light intensity 50%70.446
SRR6706288Light intensity 20%64.929
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.037
CNS0095593Slightly white alabastrum(diploid) 240.420
CNS0095594Slightly white alabastrum(diploid) 331.040
CNS0095595Whole white alabastrum(diploid) 228.688
CNS0095596Whole white alabastrum(diploid) 336.330
CNS0095597Whole white alabastrum(diploid) 431.135
CNS0095598Silvery flower (diploied) 140.638
CNS0095599Silvery flower (diploied) 234.398
CNS0095600Silvery flower (diploied) 355.853
CNS0095601Golden flower (diploid) 144.947
CNS0095602Golden flower (diploid) 263.438
CNS0095603Golden flower (diploid) 359.015
CNS0095604Slightly white alabastrum(tetraploid) 141.827
CNS0095605Slightly white alabastrum(tetraploid) 238.295
CNS0095606Slightly white alabastrum(tetraploid) 369.687
CNS0095607Whole white alabastrum(tetraploid) 127.292
CNS0095608Whole white alabastrum(tetraploid) 220.145
CNS0095609Whole white alabastrum(tetraploid) 344.601
CNS0095610Silvery flower (tetraploid) 157.388
CNS0095611Silvery flower (tetraploid) 265.923
CNS0095612Silvery flower (tetraploid) 358.458
CNS0095613Golden flower (tetraploid) 138.956
CNS0095614Golden flower (tetraploid) 251.836
CNS0095615Golden flower (tetraploid) 367.516
CRA001975CRR073297Stem 180.462
CRR073298Stem 269.592
CRR073299Stem 382.673
CRR073300Leaf 178.664
CRR073301Leaf 275.161
CRR073302Leaf 368.364
CRR073303Juvenile bud 163.624
CRR073304Juvenile bud 269.014
CRR073305Juvenile bud 385.427
CRR073306Third green 137.166
CRR073307Third green 238.228
CRR073308Third green 339.742
CRR073309Second white 156.050
CRR073310Second white 243.920
CRR073311Second white 332.178
CRR073312Silver flowering 134.864
CRR073313Silver flowering 237.667
CRR073314Silver flowering 346.585
CRR073315Gold flowering 139.704
CRR073316Gold flowering 247.882
CRR073317Gold flowering 337.485
CRR073318Tawny withering 157.389
CRR073319Tawny withering 255.986
CRR073320Tawny withering 348.837