Gene detail

Detail information of GWHGAAZE007726

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI27347.3	2.5355E-135	unnamed protein product [Vitis vinifera]
Swissprot	tr\|F4KGY6\|RVE1_ARATH	1E-62	Protein REVEILLE 1
trEMBL	tr\|D7TA25\|D7TA25_VITVI	9E-136	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27347.3}
TAIR10	AT5G17300.1	4E-49	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51219606	51223266	+
GWHAAZE00000002	mRNA	51219606	51223266	+
GWHAAZE00000002	exon	51219606	51219695	+
GWHAAZE00000002	exon	51220691	51220765	+
GWHAAZE00000002	exon	51220869	51220980	+
GWHAAZE00000002	exon	51221065	51221126	+
GWHAAZE00000002	exon	51221268	51221672	+
GWHAAZE00000002	exon	51222255	51223266	+
GWHAAZE00000002	CDS	51219606	51219695	+
GWHAAZE00000002	CDS	51220691	51220765	+
GWHAAZE00000002	CDS	51220869	51220980	+
GWHAAZE00000002	CDS	51221065	51221126	+
GWHAAZE00000002	CDS	51221268	51221672	+
GWHAAZE00000002	CDS	51222255	51222908	+
GWHAAZE00000002	three_prime_UTR	51222909	51223266	+

Transcript Sequence
>GWHTAAZE007734 TTTTGGGGATTACTTGTTAAAAAATACACCATTCCGGAGAGGGAAACTTGGACTGAAGAATCAATGGTTTCTGCAAGTATTGATATACAGGATCAAAGTGGAGGCACAAGGTCAAGTGGGGTGCCAAACGATCAATTCATTCTTGGGGATGACTATGCTGCAAAGGTGAGAAAACCATACACAATAACTAAACAAAGGGAACGGTGGACAGAAGAAGAGCACAAGAAGTTTGTTGAAGCTTTAAAGCTTTATGGTCGGGCTTGGCGACGTATAGAAGAGCATGTAGGCACCAAAACCGCTGTTCAGATTAGAAGTCATGCCCAAAAATTTTTTACTAAGGTTGTTCGTGAGTCGAGTGGAAGTGATGTGAACTCAGTGAAGCCCATAGAGATTCCTCCTCCTCGTCCGAAACGGAAACCGATGCACCCGTATCCTCGGAAATTACCATCTCCGCCTAAAAATGGCAAACATTTTCCAGAAGAATGTGGAAGATCTCTGTCCCCTAATTCTTTGGTTTCAGAACCAGAGAACCAATCTCCGACTTCAGTGTTAGTTGGTTCAGAGATGCTAGGTGGCACTGATTCTGGTACGCCACATGGCAGTTCGTCAATGGCTTCATCCGTTGACGGGCTCAATCCCAGTGGCTCGCAACTGTGTGAGCCGAATAGCTTGCCGGAAGAAAATGGTTCTTCGTCATTAGACCAAGAAAACGTCAGCTCAGACCCAGATGTGCAAGTTCCCATGAAAATGGAGTTATTCCCCCAAGAAAATGATTCTGTGCAAGAAGCATCGGCTGAGGCATCATCAGCCCAGTGTTTGAAGCTCTTTGGCAAGACTGTATTAGTCACTGATTCCCACAGACCATCTTCACCAGCCACGGGGACCTCTAAATCGCAGCCTCAAGAACCGACCAATGAGAGACCAGTCCAAACACTGCCTTGCAATATAACGCCAAAAGCAGAATTCTCATGGAACCCTTTACCTCGTGCACCTGCAGCTCTCTATTACATGCAGTTCCCTAAAGAAAACTCGGACCCAACCGAACTTGTCTCCGCTTCTATGCCCTGGTGGAATCTTTATGGAGGAGTTCCATTTCCTTTGATGCAGCTGCACAACACCGTCCCGGTGAAATCACAGCTGTCCGATGGTAACAAGGCCCAAGATCAAGAACTTCAAAAGGAAGGTTCTTGGACCAGTTCAAATACCGGGTCAGCCAATGCTGAGGATTCTGAGATACAGAGTAAAAGAAACGAACCGAAAGTGAAATTTGGGGCGACCCCGGGTAAGTGTATAAAGGGGTTTGTGCCGTATAAGAGATGTTTAGAGGAGAGAGAAAGTAATACATTAACAATGGCCGGTGAAGAGAGAGAAGAGCAAAGAATTAGGCTTTGCTTGTAGTAGGATGCAGGTAGGTTCTTCATTAGGATGTCCATTTGATTTTTGAGGATAGGGTTTTCTGGCTGGTTGAAGATTTGGTTCAGGTGGTGTAATGGTAAAATTTGTAATGGGTTTTTGCTCTTTGGATGACGGGAAAGTGCACAGAAAATATAGCAGGGTAGGGCGCAGCAATACAAGATTAAAAGTTTCATCTTGTATTATTTATTTATTTTTCCTCTTCAACTGTTCAGCCAGGTTCCTTTGTAATGTTTGAATGTTTTTTCCTTGCATTTGACCAGCTATTGTGTTCCTTTATAATTCTTCTTTTTTCTTCTGTTCAAATGTGAATTGAATTCCAAAATGTGTCTTTATTTAGTCA

Network for GWHGAAZE007726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	66	109	4.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.782
	SRR3591706	second leaf	9.498
	SRR3591707	mature leaf	8.748
	SRR3591708	Shoot apex	22.739
	SRR3591709	Stem	22.991
	SRR3591710	White floral bud	11.162
	SRR3591711	White flower	11.965
	SRR3591712	Green floral bud	11.491
	SRR3591713	Yellow flower	7.588
SRP173429	SRR8316895	Juvenile bud stage	20.930
	SRR8316896	Juvenile bud stage	48.173
	SRR8316897	Juvenile bud stage	12.587
	SRR8316894	Third green stage	4.866
	SRR8316900	Third green stage	14.895
	SRR8316901	Third green stage	14.615
	SRR8316898	Complete white stage	4.661
	SRR8316899	Complete white stage	16.204
	SRR8316903	Complete white stage	10.949
	SRR8316902	Silver flowering stage	8.664
	SRR8316904	Silver flowering stage	8.830
	SRR8316905	Silver flowering stage	2.931
	SRR8316906	Gold flowering stage	18.842
	SRR8316907	Gold flowering stage	21.669
	SRR8316908	Gold flowering stage	10.653
SRP132670	SRR6706286	Control	14.828
	SRR6706287	Light intensity 50%	12.724
	SRR6706288	Light intensity 20%	10.333
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.275
	CNS0095593	Slightly white alabastrum(diploid) 2	13.400
	CNS0095594	Slightly white alabastrum(diploid) 3	15.701
	CNS0095595	Whole white alabastrum(diploid) 2	16.275
	CNS0095596	Whole white alabastrum(diploid) 3	11.607
	CNS0095597	Whole white alabastrum(diploid) 4	17.276
	CNS0095598	Silvery flower (diploied) 1	19.807
	CNS0095599	Silvery flower (diploied) 2	46.522
	CNS0095600	Silvery flower (diploied) 3	16.862
	CNS0095601	Golden flower (diploid) 1	78.192
	CNS0095602	Golden flower (diploid) 2	34.289
	CNS0095603	Golden flower (diploid) 3	33.398
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.583
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.251
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.231
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.746
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.764
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.810
	CNS0095610	Silvery flower (tetraploid) 1	9.314
	CNS0095611	Silvery flower (tetraploid) 2	5.586
	CNS0095612	Silvery flower (tetraploid) 3	4.051
	CNS0095613	Golden flower (tetraploid) 1	3.732
	CNS0095614	Golden flower (tetraploid) 2	6.535
	CNS0095615	Golden flower (tetraploid) 3	5.582
CRA001975	CRR073297	Stem 1	21.303
	CRR073298	Stem 2	18.518
	CRR073299	Stem 3	13.048
	CRR073300	Leaf 1	18.301
	CRR073301	Leaf 2	23.947
	CRR073302	Leaf 3	8.882
	CRR073303	Juvenile bud 1	18.695
	CRR073304	Juvenile bud 2	15.721
	CRR073305	Juvenile bud 3	20.307
	CRR073306	Third green 1	44.549
	CRR073307	Third green 2	30.416
	CRR073308	Third green 3	38.643
	CRR073309	Second white 1	26.696
	CRR073310	Second white 2	26.898
	CRR073311	Second white 3	34.023
	CRR073312	Silver flowering 1	30.050
	CRR073313	Silver flowering 2	21.745
	CRR073314	Silver flowering 3	14.044
	CRR073315	Gold flowering 1	26.777
	CRR073316	Gold flowering 2	33.794
	CRR073317	Gold flowering 3	26.015
	CRR073318	Tawny withering 1	24.931
	CRR073319	Tawny withering 2	23.396
	CRR073320	Tawny withering 3	26.101