Gene detail

Detail information of GWHGAAZE007719

Functional Annotation

Database	Orthologs	Annotation
Nr	KDO57303.1	hypothetical protein CISIN_1g039105mg [Citrus sinensis]
Swissprot	tr\|Q8H191\|PAO4_ARATH	Probable polyamine oxidase 4
trEMBL	tr\|A0A067EQD2\|A0A067EQD2_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO57303.1}
TAIR10	AT1G65840.1	polyamine oxidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	50983138	50989711	+
GWHAAZE00000002	mRNA	50983138	50989711	+
GWHAAZE00000002	exon	50983138	50983177	+
GWHAAZE00000002	exon	50984626	50984741	+
GWHAAZE00000002	exon	50984828	50984967	+
GWHAAZE00000002	exon	50985437	50985479	+
GWHAAZE00000002	exon	50986041	50986186	+
GWHAAZE00000002	exon	50986941	50987028	+
GWHAAZE00000002	exon	50987129	50987214	+
GWHAAZE00000002	exon	50987311	50987417	+
GWHAAZE00000002	exon	50988165	50988327	+
GWHAAZE00000002	exon	50988610	50989039	+
GWHAAZE00000002	exon	50989394	50989711	+
GWHAAZE00000002	CDS	50983138	50983177	+
GWHAAZE00000002	CDS	50984626	50984741	+
GWHAAZE00000002	CDS	50984828	50984967	+
GWHAAZE00000002	CDS	50985437	50985479	+
GWHAAZE00000002	CDS	50986041	50986186	+
GWHAAZE00000002	CDS	50986941	50987028	+
GWHAAZE00000002	CDS	50987129	50987214	+
GWHAAZE00000002	CDS	50987311	50987417	+
GWHAAZE00000002	CDS	50988165	50988327	+
GWHAAZE00000002	CDS	50988610	50989039	+
GWHAAZE00000002	CDS	50989394	50989711	+

Transcript Sequence
>GWHTAAZE007727 ATGGAGATCAAGGATTCTCTTTCTAGCGATTTACTGGACGGCACATTTGCTTCATGCATTGAGAGGAAGTGCAATTCACTCCCTTCAGTCATAGTGATTGGTGCCGGTATTTCAGGGATCTCTGCTGCACGTATCCTCCGTAATGCATCTTTTAAGGTACTCTTGTTGGAGTCACGGGATAGAATTGGTGGCCGCATTCACACTGACTACACATTTGGTTGCCCAGTGGATATGGGTGCATCATGGCATGTTTATACCTTACTTTATTTTACTTTCCCGAATGATTTGTATGCCCTCTTATATTGCTCGATGAAACCTTCTCCTTCATCATCAACCAAGGTCCATTTCTTATTATTTTTTCATTCATACAGGCTACATGGTGTTTGCAATGAGAATCCATTAGCTCCGATGATACGTCGTTTAGGGCTTACATTATATCGGACAAGTGGTGACAACTCTGTGCTATATGACCATGATTTGGAAAGCTATTCACTTTTTGATATGGATGGTCGTCAAGTTCCTCAACAGATGGTTATTGAAGTTGGAGAGGCATTCAAGAAAATTCTCAAGGAGACTGAGAAAGTGAGGGATGAAAATTGTAATGACTTATCCGTTCTTCAAGCAATATCAATTGTGTTGGATAGACATCCGGAATTAAGACAAGAAGGACTTGCCCATGAAGTGTTACAGTGGTATATATGTAGAATGGAAGCTTGGTTTGCTGCCGATGCAGATATGATCTCTCTTAAAAGCTGGGATGAGGCAATAACCAAAAGAAAATTTGAATACTATCTTTATCATCTTCATATATCGATATACCTTGATGTGCAGGAGCATGTTCTCACTGGTGGTCATGGACTTATGGTGCAAGGTTATTATCCCGTTCTTAGGGCTCTGGCAAAAGATATTGACATTCGCTTGAATCACAGGGTCGCAAGGATATGCAGTGGGTTTAATGAGGTGACAGTTACACTCGATGATGGGAGGAACTTTGTTGCAGATGCCGCCATTATAACAGTTCCCATTGGGGTTCTCAAAGCAAACTTAATTGAGTTTGAGCCAAAATTGCCTGAATGGAAGCTTTCCGCAATAGCAGATCTCGGTATGGGCAACGAAAACAAGATCGCGATGAGATTTGATAATGCATTTTGGCCGAATGTGGAACTATTAGGGACTGTGGCTCCCACTTCTTATGCCTGTGGCTATTTTCTCAATCTCCATAAAGCAACGGGTTACCCTGTCCTTGTTTATATGGCTGCTGGGAGATTTGCTTATGATCTCGAGAAGCTATCGGATGAATCCGCTGCAAATTTTGTGATGAGGCAGCTCAAGAAAATGTTTCCCGATGCAACTGAGCCTGTTCAGTATCTGGTCTCGCATTGGGGAACGGACCAGGACTCCCTTGGATGTTATTCATACGACTTGGTCGGAAAGCCAGCGGATGTGTATGAAAGGCTTCGAGCGCCGTTAGGTAATCTATTCTTTGGAGGAGAAGCTGTAAGCATGGAGAACCAAGGATCCGTACACGGGGCCTACTCATCTGGAGTTATGGCAGCTGAAAATTGCCGCACCCATCTCATGGAGAGACTTGGTAGCTGGGAAAAGATACAACAGCTCGCCTCTTTTAGGGACGAAATTCTCGAAGCCACAATTCCCCTGCAGATCTCGAGGATGTGA

Network for GWHGAAZE007719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	37	83	1.90E-14
PF01593.25	Amino_oxidase	125	520	2.60E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17839	PAO4, PAO3, PAO2	Metabolic pathways	map01100
		Arginine and proline metabolism	map00330
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.585
	SRR3591706	second leaf	10.080
	SRR3591707	mature leaf	13.874
	SRR3591708	Shoot apex	12.146
	SRR3591709	Stem	34.159
	SRR3591710	White floral bud	68.913
	SRR3591711	White flower	45.785
	SRR3591712	Green floral bud	76.283
	SRR3591713	Yellow flower	39.697
SRP173429	SRR8316895	Juvenile bud stage	18.627
	SRR8316896	Juvenile bud stage	20.823
	SRR8316897	Juvenile bud stage	11.681
	SRR8316894	Third green stage	11.878
	SRR8316900	Third green stage	51.862
	SRR8316901	Third green stage	49.746
	SRR8316898	Complete white stage	29.242
	SRR8316899	Complete white stage	48.531
	SRR8316903	Complete white stage	51.956
	SRR8316902	Silver flowering stage	12.594
	SRR8316904	Silver flowering stage	18.159
	SRR8316905	Silver flowering stage	4.365
	SRR8316906	Gold flowering stage	12.294
	SRR8316907	Gold flowering stage	11.850
	SRR8316908	Gold flowering stage	19.348
SRP132670	SRR6706286	Control	26.208
	SRR6706287	Light intensity 50%	33.429
	SRR6706288	Light intensity 20%	37.158
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.730
	CNS0095593	Slightly white alabastrum(diploid) 2	27.302
	CNS0095594	Slightly white alabastrum(diploid) 3	36.456
	CNS0095595	Whole white alabastrum(diploid) 2	55.981
	CNS0095596	Whole white alabastrum(diploid) 3	66.001
	CNS0095597	Whole white alabastrum(diploid) 4	65.852
	CNS0095598	Silvery flower (diploied) 1	15.257
	CNS0095599	Silvery flower (diploied) 2	10.098
	CNS0095600	Silvery flower (diploied) 3	22.469
	CNS0095601	Golden flower (diploid) 1	10.557
	CNS0095602	Golden flower (diploid) 2	17.475
	CNS0095603	Golden flower (diploid) 3	15.743
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.173
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.620
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	71.933
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.365
	CNS0095609	Whole white alabastrum(tetraploid) 3	62.895
	CNS0095610	Silvery flower (tetraploid) 1	21.091
	CNS0095611	Silvery flower (tetraploid) 2	16.403
	CNS0095612	Silvery flower (tetraploid) 3	26.564
	CNS0095613	Golden flower (tetraploid) 1	22.895
	CNS0095614	Golden flower (tetraploid) 2	19.861
	CNS0095615	Golden flower (tetraploid) 3	16.549
CRA001975	CRR073297	Stem 1	22.901
	CRR073298	Stem 2	23.995
	CRR073299	Stem 3	17.478
	CRR073300	Leaf 1	42.231
	CRR073301	Leaf 2	36.249
	CRR073302	Leaf 3	24.941
	CRR073303	Juvenile bud 1	32.316
	CRR073304	Juvenile bud 2	29.618
	CRR073305	Juvenile bud 3	21.902
	CRR073306	Third green 1	43.076
	CRR073307	Third green 2	48.773
	CRR073308	Third green 3	36.198
	CRR073309	Second white 1	6.926
	CRR073310	Second white 2	6.472
	CRR073311	Second white 3	5.126
	CRR073312	Silver flowering 1	9.116
	CRR073313	Silver flowering 2	6.841
	CRR073314	Silver flowering 3	9.332
	CRR073315	Gold flowering 1	13.712
	CRR073316	Gold flowering 2	15.643
	CRR073317	Gold flowering 3	9.544
	CRR073318	Tawny withering 1	20.753
	CRR073319	Tawny withering 2	21.844
	CRR073320	Tawny withering 3	18.074