Detail information of GWHGAAZE007712


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01733.10unnamed protein product [Coffea canephora]
Swissprottr|Q9FGV1|ARFH_ARATH0Auxin response factor 8
trEMBLtr|A0A068U2C0|A0A068U2C0_COFCA0Auxin response factor {ECO:0000256|RuleBase:RU004561}
TAIR10AT5G37020.10auxin response factor 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5081510750825923-
GWHAAZE00000002mRNA5081510750825923-
GWHAAZE00000002exon5082583650825923-
GWHAAZE00000002exon5082543750825549-
GWHAAZE00000002exon5082515950825257-
GWHAAZE00000002exon5082498950825045-
GWHAAZE00000002exon5082473950824894-
GWHAAZE00000002exon5082450050824584-
GWHAAZE00000002exon5082309550823185-
GWHAAZE00000002exon5082280850822972-
GWHAAZE00000002exon5082259450822716-
GWHAAZE00000002exon5082218250822257-
GWHAAZE00000002exon5081896250819109-
GWHAAZE00000002exon5081705350817957-
GWHAAZE00000002exon5081677050816960-
GWHAAZE00000002exon5081510750815646-
GWHAAZE00000002five_prime_UTR5082587950825923-
GWHAAZE00000002CDS5082583650825878-
GWHAAZE00000002CDS5082543750825549-
GWHAAZE00000002CDS5082515950825257-
GWHAAZE00000002CDS5082498950825045-
GWHAAZE00000002CDS5082473950824894-
GWHAAZE00000002CDS5082450050824584-
GWHAAZE00000002CDS5082309550823185-
GWHAAZE00000002CDS5082280850822972-
GWHAAZE00000002CDS5082259450822716-
GWHAAZE00000002CDS5082218250822257-
GWHAAZE00000002CDS5081896250819109-
GWHAAZE00000002CDS5081705350817957-
GWHAAZE00000002CDS5081677050816960-
GWHAAZE00000002CDS5081546650815646-
GWHAAZE00000002three_prime_UTR5081510750815465-
Transcript Sequence

Network for GWHGAAZE007712

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B31272287.10E-21
PF06507.14Auxin_resp2533362.70E-33
PF02309.17AUX_IAA6807712.60E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3-ARF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0009725biological_processresponse to hormone
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf100.422
SRR3591706second leaf14.214
SRR3591707mature leaf15.192
SRR3591708Shoot apex71.892
SRR3591709Stem37.496
SRR3591710White floral bud39.238
SRR3591711White flower26.196
SRR3591712Green floral bud128.761
SRR3591713Yellow flower6.233
SRP173429 SRR8316895Juvenile bud stage 51.849
SRR8316896Juvenile bud stage 73.286
SRR8316897Juvenile bud stage 40.449
SRR8316894Third green stage 48.607
SRR8316900Third green stage 171.042
SRR8316901Third green stage 155.681
SRR8316898Complete white stage 8.827
SRR8316899Complete white stage 187.697
SRR8316903Complete white stage 16.329
SRR8316902Silver flowering stage4.478
SRR8316904Silver flowering stage6.294
SRR8316905Silver flowering stage1.742
SRR8316906Gold flowering stage 3.111
SRR8316907Gold flowering stage 4.415
SRR8316908Gold flowering stage 3.219
SRP132670SRR6706286Control157.831
SRR6706287Light intensity 50%172.490
SRR6706288Light intensity 20%194.286
CNP0000432CNS0095592Slightly white alabastrum(diploid) 159.065
CNS0095593Slightly white alabastrum(diploid) 298.164
CNS0095594Slightly white alabastrum(diploid) 348.059
CNS0095595Whole white alabastrum(diploid) 280.145
CNS0095596Whole white alabastrum(diploid) 370.875
CNS0095597Whole white alabastrum(diploid) 473.928
CNS0095598Silvery flower (diploied) 145.530
CNS0095599Silvery flower (diploied) 238.797
CNS0095600Silvery flower (diploied) 324.642
CNS0095601Golden flower (diploid) 134.071
CNS0095602Golden flower (diploid) 221.421
CNS0095603Golden flower (diploid) 322.506
CNS0095604Slightly white alabastrum(tetraploid) 192.093
CNS0095605Slightly white alabastrum(tetraploid) 266.886
CNS0095606Slightly white alabastrum(tetraploid) 3224.811
CNS0095607Whole white alabastrum(tetraploid) 151.014
CNS0095608Whole white alabastrum(tetraploid) 242.875
CNS0095609Whole white alabastrum(tetraploid) 3126.990
CNS0095610Silvery flower (tetraploid) 122.581
CNS0095611Silvery flower (tetraploid) 232.604
CNS0095612Silvery flower (tetraploid) 311.449
CNS0095613Golden flower (tetraploid) 16.097
CNS0095614Golden flower (tetraploid) 213.694
CNS0095615Golden flower (tetraploid) 33.334
CRA001975CRR073297Stem 1111.089
CRR073298Stem 2105.184
CRR073299Stem 394.275
CRR073300Leaf 1182.216
CRR073301Leaf 2169.584
CRR073302Leaf 3127.979
CRR073303Juvenile bud 1118.000
CRR073304Juvenile bud 254.611
CRR073305Juvenile bud 3191.580
CRR073306Third green 14.301
CRR073307Third green 24.728
CRR073308Third green 37.260
CRR073309Second white 11.360
CRR073310Second white 21.492
CRR073311Second white 30.720
CRR073312Silver flowering 10.515
CRR073313Silver flowering 20.702
CRR073314Silver flowering 30.889
CRR073315Gold flowering 17.420
CRR073316Gold flowering 214.625
CRR073317Gold flowering 33.166
CRR073318Tawny withering 119.171
CRR073319Tawny withering 216.457
CRR073320Tawny withering 324.089