Detail information of GWHGAAZE007701


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACV65036.103-hydroxy-3-methylglutaryl coenzyme A reductase [Panax quinquefolius]
Swissprottr|P48020|HMDH1_SOLTU03-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|D3U313|D3U313_PANQU03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIR10AT1G76490.10hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5059733850602671+
GWHAAZE00000002mRNA5059733850602671+
GWHAAZE00000002exon5059733850598368+
GWHAAZE00000002exon5059962850599809+
GWHAAZE00000002exon5059997650600322+
GWHAAZE00000002exon5060242950602671+
GWHAAZE00000002CDS5059733850598368+
GWHAAZE00000002CDS5059962850599809+
GWHAAZE00000002CDS5059997650600322+
GWHAAZE00000002CDS5060242950602671+
Transcript Sequence

Network for GWHGAAZE007701

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.19HMG-CoA_red2145901.70E-143
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0015936biological_processcoenzyme A metabolic process
GO:0008299biological_processisoprenoid biosynthetic process
GO:0004420molecular_functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050662molecular_functioncoenzyme binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.737
SRR3591706second leaf118.184
SRR3591707mature leaf5.092
SRR3591708Shoot apex67.477
SRR3591709Stem1.054
SRR3591710White floral bud24.849
SRR3591711White flower8.639
SRR3591712Green floral bud5.029
SRR3591713Yellow flower0.645
SRP173429 SRR8316895Juvenile bud stage 1.155
SRR8316896Juvenile bud stage 1.355
SRR8316897Juvenile bud stage 0.229
SRR8316894Third green stage 0.168
SRR8316900Third green stage 1.079
SRR8316901Third green stage 0.761
SRR8316898Complete white stage 0.122
SRR8316899Complete white stage 1.620
SRR8316903Complete white stage 1.193
SRR8316902Silver flowering stage0.111
SRR8316904Silver flowering stage0.381
SRR8316905Silver flowering stage0.271
SRR8316906Gold flowering stage 0.203
SRR8316907Gold flowering stage 0.051
SRR8316908Gold flowering stage 0.291
SRP132670SRR6706286Control1.706
SRR6706287Light intensity 50%2.418
SRR6706288Light intensity 20%1.459
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.834
CNS0095593Slightly white alabastrum(diploid) 20.839
CNS0095594Slightly white alabastrum(diploid) 31.633
CNS0095595Whole white alabastrum(diploid) 20.981
CNS0095596Whole white alabastrum(diploid) 30.891
CNS0095597Whole white alabastrum(diploid) 42.924
CNS0095598Silvery flower (diploied) 19.357
CNS0095599Silvery flower (diploied) 28.136
CNS0095600Silvery flower (diploied) 31.760
CNS0095601Golden flower (diploid) 13.293
CNS0095602Golden flower (diploid) 21.392
CNS0095603Golden flower (diploid) 31.308
CNS0095604Slightly white alabastrum(tetraploid) 13.225
CNS0095605Slightly white alabastrum(tetraploid) 22.842
CNS0095606Slightly white alabastrum(tetraploid) 36.400
CNS0095607Whole white alabastrum(tetraploid) 112.776
CNS0095608Whole white alabastrum(tetraploid) 28.672
CNS0095609Whole white alabastrum(tetraploid) 32.133
CNS0095610Silvery flower (tetraploid) 10.765
CNS0095611Silvery flower (tetraploid) 23.793
CNS0095612Silvery flower (tetraploid) 39.130
CNS0095613Golden flower (tetraploid) 10.838
CNS0095614Golden flower (tetraploid) 20.178
CNS0095615Golden flower (tetraploid) 32.691
CRA001975CRR073297Stem 13.938
CRR073298Stem 24.361
CRR073299Stem 36.035
CRR073300Leaf 12.002
CRR073301Leaf 21.623
CRR073302Leaf 30.896
CRR073303Juvenile bud 16.065
CRR073304Juvenile bud 28.841
CRR073305Juvenile bud 32.069
CRR073306Third green 16.343
CRR073307Third green 27.662
CRR073308Third green 36.344
CRR073309Second white 10.430
CRR073310Second white 21.539
CRR073311Second white 31.134
CRR073312Silver flowering 17.218
CRR073313Silver flowering 213.174
CRR073314Silver flowering 34.819
CRR073315Gold flowering 17.526
CRR073316Gold flowering 22.119
CRR073317Gold flowering 34.618
CRR073318Tawny withering 15.777
CRR073319Tawny withering 25.701
CRR073320Tawny withering 36.173