Gene detail

Detail information of GWHGAAZE007677

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01781.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|P51568\|AFC3_ARATH	1E-45	Serine/threonine-protein kinase AFC3
trEMBL	tr\|A0A068TZW5\|A0A068TZW5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01781.1}
TAIR10	AT2G17530.3	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	50076872	50081752	-
GWHAAZE00000002	mRNA	50076872	50081752	-
GWHAAZE00000002	exon	50081576	50081752	-
GWHAAZE00000002	exon	50078604	50079389	-
GWHAAZE00000002	exon	50077781	50077828	-
GWHAAZE00000002	exon	50076872	50077397	-
GWHAAZE00000002	CDS	50081576	50081752	-
GWHAAZE00000002	CDS	50078604	50079389	-
GWHAAZE00000002	CDS	50077781	50077828	-
GWHAAZE00000002	CDS	50077071	50077397	-
GWHAAZE00000002	three_prime_UTR	50076872	50077070	-

Transcript Sequence
>GWHTAAZE007685 ATGTCGTCTTCGTCAGGATCGGAAGAAGAGGACGAGGGAATTGATTCATACAGGAAAGGAGGATATCACGCTGTTAGAATCGGCGATTCGTTCGCTAAAGGAAGATATATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACTGTTTGGCTTGCTTACGATACACAAACTTCTAAGTATGTAGGTCTTAAGATCCAAAAAAGTGCGGCACAATTTGCCCAAGCTGCTATACATGAAATTGAAGTCCTTTGTGCTATCGCTAAGGGTGACCCTGAGAGCAGCAAGTGTGTTGTACGGTTGATTGACAACTTCAAGCACGCGGGCCCAAATGGACAGCATTGGTGCATGGTCCTAGAATTTCTAGGTGATAGCTTACTCCAACTCATTAAATACAACCGTTACAAAGGCCTTGAGCTAGATAAAGTTAAGGAGATATGCAGATGCATATTAGTCGGTCTAGATTATTTGCATAGAGAACTTGGTATCATCCACACGGACTTGAAACCTGAAAACATCCTTCTAGTTTCCACCATTAATCCTTCCAAAGATCCAGTTAGGTCAAAGGCGACCCCCATTCTTGAAAGGCCTGAGGGGAATCCAAATGGAGCAACCATAAGTCTTATTGAGAGAAGGTTAAAGCAAAGGGCTAGGAGGGCTGTGGCTCGGATATCTAGTAAACATGAATCAATTGGAGGGGTGGGGTCCACTCCAAAGCCAGCTAGATGTTTGGATGGGATTGACTTGAGGTGTAAAGTTGTGGATTTTGGGAATGCATGTTGGGCCAATAAGCCAATTGCAGAAGAGATTCAAACGAGACAGTATAGGGCTCCTGAGGTTATACTCCAGTCTGGATACTCTTTCTCTGTCGATATGTGGTCGTTTGCTTGCACTGCCTTTGAGCTTGCTACTGGGGAGATGATGTTTGCTCCAAAGAGTGGACAAGGTTTCAGCGAAGATGAGGACCACCTTGCTTTAATGATGGAACACCTTGGAAAGATGCCTAAGAAGATAGCAATAGCTGGAACCCGGTCCAAAGATTACTTCGATAGACATGGGGATTTGAAGAGAATCCGGAGACTGAAATACTGGCCCCTCGATAAATTACTAGTTGAGAAATTCAAATTCTCTGAAACGGACGCGAGCGCATTTGCTGAGTTTCTCTGTCCGATTCTCGATTTTACCCCCGAGAAGAGACCGACAGCTCAGCAATGCTTGAAACATCCATGGCTCGAAATCAAGAATCAAGGTAATAGCGAGGGGAAGAGTGAACCTAGTGTAGAAAAGGTGGATGGTGGGGTGAGAAAACTTAAGATTGAGGGAGTAAGTGAAGAATAGATTTTCAGAGGGGCTGTTAATGAAATATACCACCCTCTTTTATACCTGTATATGAGTATTCAATATTGATTGTGATATATTTTTTGTTTCTTTTGTTTAAAGTGTCAATAAGTTTTAATTGTTGATTTAACTGAGATGTAATATATAGAATGATTACTGAGGAAATGATACTAGTGATGGGAAATTTTTTACTACAATA

Network for GWHGAAZE007677

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	37	177	2.00E-20
PF00069.26	Pkinase	251	411	6.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_SRPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.484
	SRR3591706	second leaf	4.197
	SRR3591707	mature leaf	7.519
	SRR3591708	Shoot apex	5.537
	SRR3591709	Stem	11.397
	SRR3591710	White floral bud	30.429
	SRR3591711	White flower	9.983
	SRR3591712	Green floral bud	17.391
	SRR3591713	Yellow flower	11.093
SRP173429	SRR8316895	Juvenile bud stage	6.492
	SRR8316896	Juvenile bud stage	9.700
	SRR8316897	Juvenile bud stage	3.800
	SRR8316894	Third green stage	4.745
	SRR8316900	Third green stage	15.793
	SRR8316901	Third green stage	17.574
	SRR8316898	Complete white stage	8.894
	SRR8316899	Complete white stage	18.647
	SRR8316903	Complete white stage	14.531
	SRR8316902	Silver flowering stage	8.196
	SRR8316904	Silver flowering stage	10.874
	SRR8316905	Silver flowering stage	6.031
	SRR8316906	Gold flowering stage	22.796
	SRR8316907	Gold flowering stage	22.108
	SRR8316908	Gold flowering stage	21.179
SRP132670	SRR6706286	Control	15.113
	SRR6706287	Light intensity 50%	15.977
	SRR6706288	Light intensity 20%	14.698
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.455
	CNS0095593	Slightly white alabastrum(diploid) 2	10.417
	CNS0095594	Slightly white alabastrum(diploid) 3	10.789
	CNS0095595	Whole white alabastrum(diploid) 2	16.612
	CNS0095596	Whole white alabastrum(diploid) 3	17.179
	CNS0095597	Whole white alabastrum(diploid) 4	18.959
	CNS0095598	Silvery flower (diploied) 1	11.037
	CNS0095599	Silvery flower (diploied) 2	11.026
	CNS0095600	Silvery flower (diploied) 3	15.794
	CNS0095601	Golden flower (diploid) 1	10.218
	CNS0095602	Golden flower (diploid) 2	13.284
	CNS0095603	Golden flower (diploid) 3	14.505
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.657
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.656
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.723
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.742
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.804
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.583
	CNS0095610	Silvery flower (tetraploid) 1	16.879
	CNS0095611	Silvery flower (tetraploid) 2	16.589
	CNS0095612	Silvery flower (tetraploid) 3	19.633
	CNS0095613	Golden flower (tetraploid) 1	14.681
	CNS0095614	Golden flower (tetraploid) 2	16.530
	CNS0095615	Golden flower (tetraploid) 3	17.967
CRA001975	CRR073297	Stem 1	10.331
	CRR073298	Stem 2	10.766
	CRR073299	Stem 3	7.480
	CRR073300	Leaf 1	15.933
	CRR073301	Leaf 2	14.231
	CRR073302	Leaf 3	9.046
	CRR073303	Juvenile bud 1	19.440
	CRR073304	Juvenile bud 2	21.603
	CRR073305	Juvenile bud 3	10.098
	CRR073306	Third green 1	16.002
	CRR073307	Third green 2	14.329
	CRR073308	Third green 3	13.675
	CRR073309	Second white 1	7.828
	CRR073310	Second white 2	12.522
	CRR073311	Second white 3	8.947
	CRR073312	Silver flowering 1	13.057
	CRR073313	Silver flowering 2	8.926
	CRR073314	Silver flowering 3	11.722
	CRR073315	Gold flowering 1	13.317
	CRR073316	Gold flowering 2	9.176
	CRR073317	Gold flowering 3	6.915
	CRR073318	Tawny withering 1	13.486
	CRR073319	Tawny withering 2	10.948
	CRR073320	Tawny withering 3	13.537