Gene detail

Detail information of GWHGAAZE007666

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096982.1	0	PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Sesamum indicum]
Swissprot	tr\|P27450\|CX32_ARATH	1E-162	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|A0A068U2G5\|A0A068U2G5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01798.1}
TAIR10	AT2G17220.2	2E-137	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	49859196	49864362	-
GWHAAZE00000002	mRNA	49859196	49864362	-
GWHAAZE00000002	exon	49859196	49859506	-
GWHAAZE00000002	exon	49861612	49861735	-
GWHAAZE00000002	exon	49862328	49862470	-
GWHAAZE00000002	exon	49862578	49862713	-
GWHAAZE00000002	exon	49863681	49864012	-
GWHAAZE00000002	exon	49864356	49864362	-
GWHAAZE00000002	CDS	49864356	49864362	-
GWHAAZE00000002	CDS	49863681	49864012	-
GWHAAZE00000002	CDS	49862578	49862713	-
GWHAAZE00000002	CDS	49862328	49862470	-
GWHAAZE00000002	CDS	49861612	49861735	-
GWHAAZE00000002	CDS	49859196	49859506	-

Transcript Sequence
>GWHTAAZE007674 ATGAAAGGGACATCCAATAATAACAGCAATGGCGTTGTCTTCTCGGCTACGAGCAGCAGCGCCGGCCAAAGCGGGTTTTCAGTGGCGGCTAGTGATGACACCTGTGCCACCGGAGAAATACTGCCAATGCCGAACTTGAAGATTTATACCTTTGCTGATTTGAAGAGCGCAACGAGTAATTTCAAGGCTACTACGGTGTTGGGTGTGGGAGGTTTTGGGAATGTTTATAAAGGATGGGTTGACGAGAAGACGCTTGAGCCGACCAAATTGGGTACTGGAATGATTGTTGCTATCAAGAAACTGAACCCCGAAAGTATGCAGGGCTTTCAAGAATGGCAGTCAGAAGTAAACTTTTTAGGGAGGCTTTCTCATCCTAACTTGGTTAAGCTGTTGGGATACTGTTGTGAGGATAGAGACCTGCTCCTTGTATACGAATTTCTTCAAAAGGGAAGCTTGGAAAATCACCTATTTAGAAGGGGCTCTACCGTTGAACCGCTTTCTTGGGTATTACGGCTCAAAATAGCCCTAGGTGCAGCCCGAGGCCTTGCTTTCTTGCACGGGTCAGAGAAGGAAATCATTTACAGAGACTTCAAGGCCTCCAATATACTTCTTGACACGAACTATAATGCAAAGATATCGGACTTTGGATTGGCAAAACTGGGGCCTGCAGGCGGAAAGTCGCATGTGTCGACCCGAGTAATGGGCACATATGGTTATGCTGCTCCTGAATACATTGCGACAGGTCATTTATACGTGAAGAGCGACGTGTATGGCTTCGGTGTTGTACTTCTGGAGATGCTGACCGGCTTACGAGCACTGGACACCAAACGCCCTACCGGTCGGCACAATTTGATAGAATGGGCAAAGCCCCTTCTCCCTTACAAAAGGAAGCTCAAGACCATTATGGATCCTCGAATAGAAGGCCAATATTCTTTAAAGGCGGCATTACAAGCTGCCGAGCTCACTCTAAATTGCCTCGAACAGGATCCGAGAAAGCGCCCCTCCATGAAAGAAGTTGTGCATGCATTGGAACAGATTGAAACCGTCCGATGA

Network for GWHGAAZE007666

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	63	341	5.50E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.072
	SRR3591706	second leaf	15.144
	SRR3591707	mature leaf	24.565
	SRR3591708	Shoot apex	16.726
	SRR3591709	Stem	29.571
	SRR3591710	White floral bud	30.346
	SRR3591711	White flower	41.929
	SRR3591712	Green floral bud	27.474
	SRR3591713	Yellow flower	38.068
SRP173429	SRR8316895	Juvenile bud stage	12.268
	SRR8316896	Juvenile bud stage	13.978
	SRR8316897	Juvenile bud stage	8.635
	SRR8316894	Third green stage	6.718
	SRR8316900	Third green stage	19.990
	SRR8316901	Third green stage	21.335
	SRR8316898	Complete white stage	16.984
	SRR8316899	Complete white stage	47.637
	SRR8316903	Complete white stage	21.886
	SRR8316902	Silver flowering stage	17.521
	SRR8316904	Silver flowering stage	21.338
	SRR8316905	Silver flowering stage	13.136
	SRR8316906	Gold flowering stage	52.573
	SRR8316907	Gold flowering stage	42.022
	SRR8316908	Gold flowering stage	54.235
SRP132670	SRR6706286	Control	31.556
	SRR6706287	Light intensity 50%	30.210
	SRR6706288	Light intensity 20%	32.386
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.226
	CNS0095593	Slightly white alabastrum(diploid) 2	16.716
	CNS0095594	Slightly white alabastrum(diploid) 3	17.874
	CNS0095595	Whole white alabastrum(diploid) 2	16.283
	CNS0095596	Whole white alabastrum(diploid) 3	14.139
	CNS0095597	Whole white alabastrum(diploid) 4	19.438
	CNS0095598	Silvery flower (diploied) 1	27.384
	CNS0095599	Silvery flower (diploied) 2	22.497
	CNS0095600	Silvery flower (diploied) 3	28.956
	CNS0095601	Golden flower (diploid) 1	24.958
	CNS0095602	Golden flower (diploid) 2	35.918
	CNS0095603	Golden flower (diploid) 3	34.833
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.186
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.202
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.674
	CNS0095610	Silvery flower (tetraploid) 1	38.027
	CNS0095611	Silvery flower (tetraploid) 2	33.278
	CNS0095612	Silvery flower (tetraploid) 3	35.415
	CNS0095613	Golden flower (tetraploid) 1	34.477
	CNS0095614	Golden flower (tetraploid) 2	39.497
	CNS0095615	Golden flower (tetraploid) 3	49.987
CRA001975	CRR073297	Stem 1	18.435
	CRR073298	Stem 2	19.439
	CRR073299	Stem 3	19.169
	CRR073300	Leaf 1	25.089
	CRR073301	Leaf 2	27.702
	CRR073302	Leaf 3	24.617
	CRR073303	Juvenile bud 1	25.843
	CRR073304	Juvenile bud 2	24.824
	CRR073305	Juvenile bud 3	25.818
	CRR073306	Third green 1	16.392
	CRR073307	Third green 2	18.437
	CRR073308	Third green 3	17.238
	CRR073309	Second white 1	15.836
	CRR073310	Second white 2	18.923
	CRR073311	Second white 3	13.637
	CRR073312	Silver flowering 1	18.334
	CRR073313	Silver flowering 2	19.170
	CRR073314	Silver flowering 3	14.216
	CRR073315	Gold flowering 1	22.589
	CRR073316	Gold flowering 2	29.679
	CRR073317	Gold flowering 3	24.530
	CRR073318	Tawny withering 1	26.073
	CRR073319	Tawny withering 2	25.552
	CRR073320	Tawny withering 3	26.730