Gene detail

Detail information of GWHGAAZE007664

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008449892.1	0	PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Cucumis melo]
Swissprot	tr\|Q9ZPI1\|SYK_ARATH	5E-65	Lysine--tRNA ligase
trEMBL	tr\|C5WTY1\|C5WTY1_SORBI	0	Lysine--tRNA ligase {ECO:0000256\|RuleBase:RU003748}
TAIR10	AT3G13490.1	4E-112	Lysyl-tRNA synthetase, class II

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	49802639	49817225	+
GWHAAZE00000002	mRNA	49802639	49817225	+
GWHAAZE00000002	exon	49802639	49802911	+
GWHAAZE00000002	exon	49805066	49805284	+
GWHAAZE00000002	exon	49805867	49805978	+
GWHAAZE00000002	exon	49806128	49806236	+
GWHAAZE00000002	exon	49806704	49806761	+
GWHAAZE00000002	exon	49807854	49807922	+
GWHAAZE00000002	exon	49812056	49812160	+
GWHAAZE00000002	exon	49814442	49814654	+
GWHAAZE00000002	exon	49814750	49814844	+
GWHAAZE00000002	exon	49815238	49815328	+
GWHAAZE00000002	exon	49815919	49816086	+
GWHAAZE00000002	exon	49816862	49817225	+
GWHAAZE00000002	CDS	49802639	49802911	+
GWHAAZE00000002	CDS	49805066	49805284	+
GWHAAZE00000002	CDS	49805867	49805978	+
GWHAAZE00000002	CDS	49806128	49806236	+
GWHAAZE00000002	CDS	49806704	49806761	+
GWHAAZE00000002	CDS	49807854	49807922	+
GWHAAZE00000002	CDS	49812056	49812160	+
GWHAAZE00000002	CDS	49814442	49814654	+
GWHAAZE00000002	CDS	49814750	49814844	+
GWHAAZE00000002	CDS	49815238	49815328	+
GWHAAZE00000002	CDS	49815919	49816086	+
GWHAAZE00000002	CDS	49816862	49816954	+
GWHAAZE00000002	three_prime_UTR	49816955	49817225	+

Transcript Sequence
>GWHTAAZE007672 ATGGAGGCATTGAAGGTATCCTCGCAGCCATTCAGAAACCTCTTCATAAACTTGGCTTCTTCTTCTTCAAAATCAGCAACCCCCATTGCCACCACCATTTCGCGAGCTTCTTCATACTCTCGCTCTTTACTCACCATTCGTTCTTCGACGTCGTCTCCCTCCACCACTGCAATCCCCAAACCCGCCGGCGGCCGGAACCGGAGGTCCTCCAGTTCCGCAACCCCCACTTCCACTTCAGACAGAGAGGCGGTTCGTGCTATCCGTCTCCAGAAGGTGGAAGAGTTGAGGAGTAAGGGGTTTGAGCCATACGCTTATAAGTGGGACCGTACTCATTCTGCTCATCAGTTGCAAGAGATATATAGGAATCTAAGCAACGGTGAAGAGTCAAACACAGAGAGTGATTGTGTAGCAATAGCAGGAAGAATTGTGGCTCGTAGGGCATTTGGGAAGCTTGCCTTTTTAACTTTAAGGGATGATTCTGGAACAATACAGCTTTACTGTGAGAAGGAAAGGCTTATAAATGGTCAATTTGATCGATTGAAGACACTTGTTGACATAGGTGATATACTGGGTGCGAGTGGCTCAATAAAGCGCACAGAGAAAGGAGAGCTTTCTGTCTGTGTGAATTCATTTTCAGTTCTTACAAAATCTCTGCTACCATTGCCTGACAAATACCATGGGCTAACAGATGTGGATAAGCGCTACCGCCAAAGATATGTAGATATGATTGCGAATCCAGACGTGGCTGATGTATTCCGGAACAGAGCGAAGATTGTATCGGAGATACGGAAGACAGTGGAATCTGTTGGCTTTATTGAAGTTGAAACACCAGTTCTACAGATGTATGAAGCATATTCAGACTACCAAAGTATGATGAACATGGCAGAAGAAATTGTTACGCGATGTACTCTTGCAGTTCATGGAAAGCTTAGTGTCGAATACCAGGGTGTAGAAATATGTTTGGAAAGGCCTTGGAGGAGGGAAACAATGCACAATCTTGTGAAAGACGCTACCGGTATTGATTTTGTCGCATTGGGTGATGATGGTGATCTAAAAGCTGCTAAAGAAGTTACTATCAAGACCCTCAACATCGGTCCTGATAAGCAAGAAAAATATTCAATTGAAGCATGCCCATCATTTGGCCATCTGCTTAATGAGGTTTTTGAGGTGATGGTAGAACCAAAGCTCATACAGCCAACATTTGTTTTGGACTATCCTATTGAGATTTCTCCTTTGGCTAAGCCACACCGAAGTCATGCAGGCTTGACTGAGAGATTTGAACTATTCATTTGTGGCCGTGAACTTGCCAATGCCTTTTCTGAATTGACCGATCCACTGGATCAGAGGGGACGCCTAGAAGAACAAGTGAGGCAACATAATGAAAAGAGAGCAGCGGCTGCTTCTGAAACGGAAAGATGCAAAAACGATAATGAAGATGAAGAATATGAGGTGACTCTTGATGAAGACTTTTTAACAGCTCTTGAATACGGGATGCCTCCGGCTTCCGGAATGGGTCTTGGAATAGACAGGCTAGTAATGCTTCTCACAAACTCAGCCAGTATTCGCGATGTTATTGCTTTCCCCGTCCTCAAGGTTCAGCAGTAGCTCTAGTAGTACTGGTATCTCCAATCCCAAAGCCCTACTCTGCTTTTGCATTTTACTTGTTAGTTTTTGAATTGGTTCTTTAGTTCCTCCCTTAAATATGATTCAGATCAGATAACTATCAGCAAAAAATTGCTAATGTACGTTGTTTAATTTTGGGAATGATAGGAGATTGATTCTTTTTACATACAAAATAAATGGACCAAAAGAAATTTTGTGAATTAAAATTGAAGTCATTGATATATCTCTTGAGTAATGCATATGATTGTTGCAA

Network for GWHGAAZE007664

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01336.26	tRNA_anti-codon	136	214	4.00E-16
PF00152.21	tRNA-synt_2	281	530	6.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04567	KARS, lysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.430
	SRR3591706	second leaf	39.202
	SRR3591707	mature leaf	22.780
	SRR3591708	Shoot apex	33.961
	SRR3591709	Stem	11.641
	SRR3591710	White floral bud	16.465
	SRR3591711	White flower	18.244
	SRR3591712	Green floral bud	25.854
	SRR3591713	Yellow flower	19.115
SRP173429	SRR8316895	Juvenile bud stage	16.000
	SRR8316896	Juvenile bud stage	20.912
	SRR8316897	Juvenile bud stage	12.079
	SRR8316894	Third green stage	9.814
	SRR8316900	Third green stage	28.032
	SRR8316901	Third green stage	23.894
	SRR8316898	Complete white stage	9.136
	SRR8316899	Complete white stage	26.621
	SRR8316903	Complete white stage	12.669
	SRR8316902	Silver flowering stage	8.524
	SRR8316904	Silver flowering stage	10.929
	SRR8316905	Silver flowering stage	4.254
	SRR8316906	Gold flowering stage	19.694
	SRR8316907	Gold flowering stage	18.287
	SRR8316908	Gold flowering stage	21.577
SRP132670	SRR6706286	Control	21.071
	SRR6706287	Light intensity 50%	21.942
	SRR6706288	Light intensity 20%	24.067
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.912
	CNS0095593	Slightly white alabastrum(diploid) 2	16.049
	CNS0095594	Slightly white alabastrum(diploid) 3	15.145
	CNS0095595	Whole white alabastrum(diploid) 2	15.053
	CNS0095596	Whole white alabastrum(diploid) 3	16.959
	CNS0095597	Whole white alabastrum(diploid) 4	12.857
	CNS0095598	Silvery flower (diploied) 1	12.540
	CNS0095599	Silvery flower (diploied) 2	12.942
	CNS0095600	Silvery flower (diploied) 3	14.936
	CNS0095601	Golden flower (diploid) 1	12.007
	CNS0095602	Golden flower (diploid) 2	13.763
	CNS0095603	Golden flower (diploid) 3	13.543
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.118
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.942
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.473
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.869
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.501
	CNS0095610	Silvery flower (tetraploid) 1	20.345
	CNS0095611	Silvery flower (tetraploid) 2	21.481
	CNS0095612	Silvery flower (tetraploid) 3	19.683
	CNS0095613	Golden flower (tetraploid) 1	11.144
	CNS0095614	Golden flower (tetraploid) 2	15.780
	CNS0095615	Golden flower (tetraploid) 3	18.342
CRA001975	CRR073297	Stem 1	24.983
	CRR073298	Stem 2	23.675
	CRR073299	Stem 3	22.551
	CRR073300	Leaf 1	27.050
	CRR073301	Leaf 2	24.988
	CRR073302	Leaf 3	22.289
	CRR073303	Juvenile bud 1	19.449
	CRR073304	Juvenile bud 2	13.577
	CRR073305	Juvenile bud 3	15.274
	CRR073306	Third green 1	8.179
	CRR073307	Third green 2	3.933
	CRR073308	Third green 3	6.388
	CRR073309	Second white 1	5.734
	CRR073310	Second white 2	12.244
	CRR073311	Second white 3	9.043
	CRR073312	Silver flowering 1	8.599
	CRR073313	Silver flowering 2	7.664
	CRR073314	Silver flowering 3	8.179
	CRR073315	Gold flowering 1	18.382
	CRR073316	Gold flowering 2	32.060
	CRR073317	Gold flowering 3	15.524
	CRR073318	Tawny withering 1	11.335
	CRR073319	Tawny withering 2	12.119
	CRR073320	Tawny withering 3	11.853