Detail information of GWHGAAZE007663


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009597269.17.87518E-80PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Nicotiana tomentosiformis]
Swissprottr|Q8W3U4|HRT2_HEVBR2E-66Rubber cis-polyprenyltransferase HRT2
trEMBLtr|M9PNM7|M9PNM7_9ASTR8E-76Cis-prenyltransferase CPT3 {ECO:0000313|EMBL:AGE89405.1}
TAIR10AT2G17570.16E-56Undecaprenyl pyrophosphate synthetase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4977763049780483-
GWHAAZE00000002mRNA4977763049780483-
GWHAAZE00000002exon4977763049778011-
GWHAAZE00000002exon4977966449779824-
GWHAAZE00000002exon4977993849780483-
GWHAAZE00000002CDS4977993849780483-
GWHAAZE00000002CDS4977966449779824-
GWHAAZE00000002CDS4977763049778011-
Transcript Sequence

Network for GWHGAAZE007663

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01255.20Prenyltransf131591.00E-46
PF02657.16SufE2373515.30E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11778DHDDS, RER2, SRT1 Biosynthesis of secondary metabolites map01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.076
SRR3591706second leaf18.599
SRR3591707mature leaf71.423
SRR3591708Shoot apex9.487
SRR3591709Stem0.603
SRR3591710White floral bud2.953
SRR3591711White flower1.809
SRR3591712Green floral bud1.750
SRR3591713Yellow flower0.705
SRP173429 SRR8316895Juvenile bud stage 4.724
SRR8316896Juvenile bud stage 2.620
SRR8316897Juvenile bud stage 0.533
SRR8316894Third green stage 0.648
SRR8316900Third green stage 1.049
SRR8316901Third green stage 0.653
SRR8316898Complete white stage 0.419
SRR8316899Complete white stage 1.805
SRR8316903Complete white stage 1.425
SRR8316902Silver flowering stage0.206
SRR8316904Silver flowering stage0.362
SRR8316905Silver flowering stage0.021
SRR8316906Gold flowering stage 0.132
SRR8316907Gold flowering stage 0.440
SRR8316908Gold flowering stage 0.061
SRP132670SRR6706286Control2.024
SRR6706287Light intensity 50%1.686
SRR6706288Light intensity 20%1.762
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.956
CNS0095593Slightly white alabastrum(diploid) 21.610
CNS0095594Slightly white alabastrum(diploid) 32.032
CNS0095595Whole white alabastrum(diploid) 20.586
CNS0095596Whole white alabastrum(diploid) 30.841
CNS0095597Whole white alabastrum(diploid) 41.668
CNS0095598Silvery flower (diploied) 14.431
CNS0095599Silvery flower (diploied) 22.858
CNS0095600Silvery flower (diploied) 30.867
CNS0095601Golden flower (diploid) 11.546
CNS0095602Golden flower (diploid) 21.434
CNS0095603Golden flower (diploid) 31.335
CNS0095604Slightly white alabastrum(tetraploid) 11.840
CNS0095605Slightly white alabastrum(tetraploid) 20.944
CNS0095606Slightly white alabastrum(tetraploid) 32.172
CNS0095607Whole white alabastrum(tetraploid) 11.201
CNS0095608Whole white alabastrum(tetraploid) 20.291
CNS0095609Whole white alabastrum(tetraploid) 31.062
CNS0095610Silvery flower (tetraploid) 11.283
CNS0095611Silvery flower (tetraploid) 21.772
CNS0095612Silvery flower (tetraploid) 30.869
CNS0095613Golden flower (tetraploid) 10.501
CNS0095614Golden flower (tetraploid) 21.758
CNS0095615Golden flower (tetraploid) 30.226
CRA001975CRR073297Stem 111.188
CRR073298Stem 25.850
CRR073299Stem 320.170
CRR073300Leaf 11.362
CRR073301Leaf 20.780
CRR073302Leaf 31.792
CRR073303Juvenile bud 10.853
CRR073304Juvenile bud 22.570
CRR073305Juvenile bud 30.563
CRR073306Third green 10.674
CRR073307Third green 20.693
CRR073308Third green 31.278
CRR073309Second white 10.174
CRR073310Second white 20.190
CRR073311Second white 30.000
CRR073312Silver flowering 10.116
CRR073313Silver flowering 20.141
CRR073314Silver flowering 30.321
CRR073315Gold flowering 133.272
CRR073316Gold flowering 237.483
CRR073317Gold flowering 357.741
CRR073318Tawny withering 10.597
CRR073319Tawny withering 21.053
CRR073320Tawny withering 31.788