Gene detail

Detail information of GWHGAAZE007661

Functional Annotation

Database	Orthologs	Annotation
Nr	ACJ11733.1	catalase [Gossypium hirsutum]
Swissprot	tr\|P17598\|CATA1_GOSHI	Catalase isozyme 1
trEMBL	tr\|D2D313\|D2D313_GOSHI	Catalase {ECO:0000256\|RuleBase:RU000498}
TAIR10	AT4G35090.1	catalase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	49713638	49717382	+
GWHAAZE00000002	mRNA	49713638	49717382	+
GWHAAZE00000002	exon	49713638	49713734	+
GWHAAZE00000002	exon	49714255	49714532	+
GWHAAZE00000002	exon	49715551	49716327	+
GWHAAZE00000002	exon	49716492	49716581	+
GWHAAZE00000002	exon	49717108	49717175	+
GWHAAZE00000002	exon	49717271	49717382	+
GWHAAZE00000002	CDS	49713638	49713734	+
GWHAAZE00000002	CDS	49714255	49714532	+
GWHAAZE00000002	CDS	49715551	49716327	+
GWHAAZE00000002	CDS	49716492	49716581	+
GWHAAZE00000002	CDS	49717108	49717175	+
GWHAAZE00000002	CDS	49717271	49717382	+

Transcript Sequence
>GWHTAAZE007669 CATCGCCCATCAAGTGCCTTTAACTCCCCATTCTTCACAACGAATTCCGGTGCTCCTGTTTGGAACAACAACTCATCTCTTTCTGTTGGAACAAGAGGTCCAATTCTTCTTGAGGATTACCATTTGGTTGAGAAACTCGCTAATTTCGATAGGGAACGTATCCCAGAACGCGTGGTTCATGCCAGAGGTGCAAGTGCCAAAGGGTTTTTTGAGGTCACTCATAATATATCTCACCTCACATGTGCTGATTTTCTTCGTGCCCCTGGGGTCCAAACCCCCGTAATTGTTAGGTTCTCCACCGTCATACATGAGCGTGGCAGCCCCGAAACTATAAGGGATCCTCGAGGCTTTGCGGTCAAGTTTTATACCCGAGAGGGTAACTTCGATATGGTAGGAAACAATTTTCCAGTCTTTTTCATCCGCGACGGAATGAAATTCCCTGACATGGTCCATGCTCTCAAACCAAACCCTAAGTCACACATACAAGAAAACTGGAGGATCCTCGATTTCTTCTCTCACCACCCAGAAAGCTTACACATGTTCACTTTCCTCTTCGATGACGTCGGTGTTCCACAAGATTACAGGCATATGGAAGGATCCGGTGTGAACACCTACACGCTAATTGACATGGCCGGGAAAGCCCATTATGTGAAATTCCATTGGAAACCAACTTGTGGAGTTAAATGTTTATTAGAAGATGAGGCAATTAAGGTTTGCGGATCGAACCACAGCCATGCTACTAAGGACCTTTACGACTCCATAATGGCTGGAAATTATCCCGAGTGGAAGCTTTTTATACAAACGATTGACCCGGAACACGAGGACAAGTTTGACTTTGACCCGGTTGATGTGACCAAGACTTGGCCAGAGGATATTGTGCCTTTGCAGCCTGTGGGGCGGTTAGTGTTGAACAAAAACATTGATAATTTTTTTGCTGAGAATGAGCAGTTGGCCTTTTGTCCCTCAGTTGTGGTGCCGGGGGTTTATTATTCGGATGATAAGTTGCTTCAGGCTCGAATATTTTCATACTCAGATACTCAGAGGTACCGGCTGGGGCCTAACTATCTCCAGCTTCCTGTAAATGCTCCCAAGTGTGCGCACCGCAACAACCACCATGACGGTTTTATGAACTTCATGCACAGAGATGAGGAGGTCAACTACTTCCCTTCGAGGTATGATCCCGTTCGCCATTCCGAGAAGTTTCCAATTCCTCCTACAATTTGCAGTGGCAAGCGTGAAAAGTGTATAATTGAGAAGGAGAATAATTTCAAGCAGCCAGGGGAAAGATACCGTTCTTTCGAGCCAGACAGGCAAGAGCGCTTTATTTGTCGATGGATTGACGCTTTATCTGACCCAAGAGTCAACCACGAGATACGGACTATATGGATCTCGTACTGGTCTCAGGTGCCTCTCATCCTTTAG

Network for GWHGAAZE007661

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00199.20	Catalase	13	393	4.10E-173
PF06628.13	Catalase-rel	418	469	1.10E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03781	katE, CAT, catB, srpA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Tryptophan metabolism	map00380
		MAPK signaling pathway - plant	map04016
		MAPK signaling pathway - yeast	map04011
		FoxO signaling pathway	map04068
		Peroxisome	map04146
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004096	molecular_function	catalase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.329
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.117
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.961
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.273
	SRR3591712	Green floral bud	0.107
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.082
	SRR8316896	Juvenile bud stage	0.154
	SRR8316897	Juvenile bud stage	0.053
	SRR8316894	Third green stage	0.131
	SRR8316900	Third green stage	0.562
	SRR8316901	Third green stage	0.246
	SRR8316898	Complete white stage	0.059
	SRR8316899	Complete white stage	0.333
	SRR8316903	Complete white stage	0.003
	SRR8316902	Silver flowering stage	0.141
	SRR8316904	Silver flowering stage	0.098
	SRR8316905	Silver flowering stage	0.120
	SRR8316906	Gold flowering stage	0.197
	SRR8316907	Gold flowering stage	0.410
	SRR8316908	Gold flowering stage	0.326
SRP132670	SRR6706286	Control	0.371
	SRR6706287	Light intensity 50%	0.247
	SRR6706288	Light intensity 20%	0.286
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.233
	CNS0095593	Slightly white alabastrum(diploid) 2	0.076
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.071
	CNS0095596	Whole white alabastrum(diploid) 3	0.126
	CNS0095597	Whole white alabastrum(diploid) 4	0.579
	CNS0095598	Silvery flower (diploied) 1	0.174
	CNS0095599	Silvery flower (diploied) 2	0.048
	CNS0095600	Silvery flower (diploied) 3	0.413
	CNS0095601	Golden flower (diploid) 1	0.065
	CNS0095602	Golden flower (diploid) 2	0.103
	CNS0095603	Golden flower (diploid) 3	0.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.443
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.397
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.282
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.284
	CNS0095610	Silvery flower (tetraploid) 1	1.044
	CNS0095611	Silvery flower (tetraploid) 2	0.770
	CNS0095612	Silvery flower (tetraploid) 3	1.460
	CNS0095613	Golden flower (tetraploid) 1	0.221
	CNS0095614	Golden flower (tetraploid) 2	0.720
	CNS0095615	Golden flower (tetraploid) 3	0.409
CRA001975	CRR073297	Stem 1	0.582
	CRR073298	Stem 2	0.159
	CRR073299	Stem 3	0.095
	CRR073300	Leaf 1	0.195
	CRR073301	Leaf 2	0.121
	CRR073302	Leaf 3	0.202
	CRR073303	Juvenile bud 1	0.184
	CRR073304	Juvenile bud 2	0.099
	CRR073305	Juvenile bud 3	0.587
	CRR073306	Third green 1	0.084
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.155
	CRR073310	Second white 2	0.032
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.214
	CRR073313	Silver flowering 2	0.131
	CRR073314	Silver flowering 3	0.387
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.030
	CRR073318	Tawny withering 1	0.308
	CRR073319	Tawny withering 2	0.295
	CRR073320	Tawny withering 3	0.227