Gene detail

Detail information of GWHGAAZE007660

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002521706.1	0	plant ubiquilin, putative [Ricinus communis]
Swissprot	tr\|Q9SII8\|DSK2B_ARATH	0	Ubiquitin domain-containing protein DSK2b
trEMBL	tr\|B9S6T7\|B9S6T7_RICCO	0	Plant ubiquilin, putative {ECO:0000313\|EMBL:EEF40693.1}
TAIR10	AT2G17200.1	8E-103	ubiquitin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	49677242	49685867	+
GWHAAZE00000002	mRNA	49677242	49685867	+
GWHAAZE00000002	exon	49677242	49677470	+
GWHAAZE00000002	exon	49679258	49680025	+
GWHAAZE00000002	exon	49681390	49681604	+
GWHAAZE00000002	exon	49681918	49682031	+
GWHAAZE00000002	exon	49683218	49683277	+
GWHAAZE00000002	exon	49683801	49683859	+
GWHAAZE00000002	exon	49684111	49684139	+
GWHAAZE00000002	exon	49685279	49685374	+
GWHAAZE00000002	exon	49685719	49685867	+
GWHAAZE00000002	CDS	49677242	49677470	+
GWHAAZE00000002	CDS	49679258	49680025	+
GWHAAZE00000002	CDS	49681390	49681604	+
GWHAAZE00000002	CDS	49681918	49682031	+
GWHAAZE00000002	CDS	49683218	49683277	+
GWHAAZE00000002	CDS	49683801	49683859	+
GWHAAZE00000002	CDS	49684111	49684139	+
GWHAAZE00000002	CDS	49685279	49685374	+
GWHAAZE00000002	CDS	49685719	49685867	+

Transcript Sequence
>GWHTAAZE007668 ATGGCCGGTGGTGATAGTGTTACGTCGGAGGGAACTGAATCCGGTGGTGGAGTTACCATACACGTCCGATGCACCAACGGCTCGAAATTCTCCGTACAGATAAACCTCGATTCCTCCGTCGGATCGTTTAAGTCGGTGGTTGCAGAGAAGTGCGATATTCCTGCTGAGCAGCAGAGGTTGATTTACAAAGGCCGGATCCTCAAGGACGATCAAAGTCTTAAAAGCTACGGTTTGGAAGCAGATCATGCTGTTCACTTGGTTCGTGGTTTCAACCCGACTGCTTCTACAAACGCTGCAGGTGCCACCACTACTGGAGGGCCAAGTCCTAATCCAACTGCTGCCCCTGGTATTGGCTCAAATGAAAGCGGGGCATTTGCAGGAGCTGGACTTGGAGCTTCCCTGTTCCCTGGTCTTGGTTCAAACGGATTAGGAGGAACTGGTGGTTTATTTGGAGCTGGGCTTCCTGAATTTGAACAGGTCCAGCAACAGTTGACTCAAAACCCCAACATGATGAGAGAAATCATGGACATGCCACTTGTTCAGAACTTAATGAATAACCCAGAAATTATGCGAAACATGATTATGAACAACCCTCAAATGCGCGAAGTTATGGATCGCAACCCGGAGCTTGCTCATGTGCTTAATGATCCAGCCACTCTCCGTCAAACAATGGAGGCTGCAAGAAACCCTGAACTGATGCGTGAAATGATGCGAAACACTGACAGAGCGATGAGCAATATTGAAGCATCTCCGGAGGGATTCAACATGCTGAGGCGCATGTACGAAAACGTTCAAGAGCCGTTTCTGAATGCAACAACAATGGGTGGGGAGAATAGAAACGATGCGGCCTCTAATCCATTTGCGGCTCTTTTGGGTGGTGGAGGGCCGGGCAGGGATCCGTCGACTAACCCCACAACAACTGGTTCTCAAACAACTACTGATTCTTCTGCTCCTGCTCCGAATATTAATCCGCTTCCCAACCCGTGGGCGTCTGCTGGCGGAGGTACCCAAACAAACAACAATCCGAGGGTGAATCCTGCTGGGAATGCTAGGCCACCGCCACTTGGTGGTATAAGTGGTCTTGGGTTCCCCGGTTTTGAGGATATGCTAGGCTCCACACCAGATCCCAATTCCATAAACCAGTTTATGCAAAATCCTGCTGTATCACAAATGATGCAAAGTCTTCTTTCCAACCCTCAGTACATGAACCAGATTCTTGGTCTCAATCCCCAGATGCGTAGCATGCTTGATTCCAATTCCCAACTCAGAGAGATGATGCAAAGCCCTGAGTTTATCCGTCAATTGACGTCCCCCGAGACAATGCAGGGCTGCTCCGAAAAGGATAACCTTCTTTTGCTCAATGTAGGGACTTTCCCTTTTGAGGGGCAAATGTTGGCTTTGCAGCAATCTCTTATGCCGAATCTTGGTCGGCAGCAGTCCACCCAGGAACCGGGTCAAAATGTTGGGGGAACAGGAACGCGTGATGCCATGGGGCTAGAGATGTTAATGAACATGTTTGGCGGACTTGGTATGGGAGGAGGTGGCCTTAATGTTGCTCCCCAATCTAATGTGCCGCCAGAGGAACGTTACGCCACTCAACTCGCACAGCTACAAGAGATGGGGTTCTTTGATGCCCAAGAGAATATACGAGCACTCACTGCCACTTCAGGTAATGTTCACGCTGCAGTCGAGCGTCTCTTGGGGAGTCCTGGTCAGTAG

Network for GWHGAAZE007660

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	20	87	1.20E-19
PF00627.32	UBA	530	566	2.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04523	UBQLN, DSK2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	99.371
	SRR3591706	second leaf	52.231
	SRR3591707	mature leaf	46.122
	SRR3591708	Shoot apex	58.357
	SRR3591709	Stem	95.513
	SRR3591710	White floral bud	122.124
	SRR3591711	White flower	129.368
	SRR3591712	Green floral bud	83.961
	SRR3591713	Yellow flower	116.473
SRP173429	SRR8316895	Juvenile bud stage	47.298
	SRR8316896	Juvenile bud stage	70.559
	SRR8316897	Juvenile bud stage	29.950
	SRR8316894	Third green stage	27.756
	SRR8316900	Third green stage	75.998
	SRR8316901	Third green stage	73.916
	SRR8316898	Complete white stage	48.375
	SRR8316899	Complete white stage	111.897
	SRR8316903	Complete white stage	77.483
	SRR8316902	Silver flowering stage	53.600
	SRR8316904	Silver flowering stage	62.495
	SRR8316905	Silver flowering stage	32.453
	SRR8316906	Gold flowering stage	131.932
	SRR8316907	Gold flowering stage	123.993
	SRR8316908	Gold flowering stage	131.387
SRP132670	SRR6706286	Control	117.177
	SRR6706287	Light intensity 50%	111.272
	SRR6706288	Light intensity 20%	107.523
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.895
	CNS0095593	Slightly white alabastrum(diploid) 2	50.607
	CNS0095594	Slightly white alabastrum(diploid) 3	47.630
	CNS0095595	Whole white alabastrum(diploid) 2	41.547
	CNS0095596	Whole white alabastrum(diploid) 3	37.149
	CNS0095597	Whole white alabastrum(diploid) 4	41.546
	CNS0095598	Silvery flower (diploied) 1	54.108
	CNS0095599	Silvery flower (diploied) 2	54.108
	CNS0095600	Silvery flower (diploied) 3	117.174
	CNS0095601	Golden flower (diploid) 1	48.109
	CNS0095602	Golden flower (diploid) 2	104.118
	CNS0095603	Golden flower (diploid) 3	97.760
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.398
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.835
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.600
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.314
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.009
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.702
	CNS0095610	Silvery flower (tetraploid) 1	137.231
	CNS0095611	Silvery flower (tetraploid) 2	125.881
	CNS0095612	Silvery flower (tetraploid) 3	113.770
	CNS0095613	Golden flower (tetraploid) 1	75.743
	CNS0095614	Golden flower (tetraploid) 2	121.434
	CNS0095615	Golden flower (tetraploid) 3	131.691
CRA001975	CRR073297	Stem 1	75.649
	CRR073298	Stem 2	70.717
	CRR073299	Stem 3	73.541
	CRR073300	Leaf 1	86.542
	CRR073301	Leaf 2	89.190
	CRR073302	Leaf 3	77.885
	CRR073303	Juvenile bud 1	94.233
	CRR073304	Juvenile bud 2	84.726
	CRR073305	Juvenile bud 3	130.213
	CRR073306	Third green 1	88.371
	CRR073307	Third green 2	78.588
	CRR073308	Third green 3	77.616
	CRR073309	Second white 1	101.125
	CRR073310	Second white 2	96.078
	CRR073311	Second white 3	89.736
	CRR073312	Silver flowering 1	95.842
	CRR073313	Silver flowering 2	119.883
	CRR073314	Silver flowering 3	96.031
	CRR073315	Gold flowering 1	32.804
	CRR073316	Gold flowering 2	55.512
	CRR073317	Gold flowering 3	45.211
	CRR073318	Tawny withering 1	78.170
	CRR073319	Tawny withering 2	55.379
	CRR073320	Tawny withering 3	75.161