Detail information of GWHGAAZE007613


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009590586.11.80878E-71PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Nicotiana tomentosiformis]
Swissprottr|Q9FY89|VP202_ARATH6E-70Vacuolar protein sorting-associated protein 20 homolog 2
trEMBLtr|G7JC58|G7JC58_MEDTR2E-71Vacuolar sorting-associated-like protein {ECO:0000313|EMBL:AES72907.1}
TAIR10AT5G09260.12E-32vacuolar protein sorting-associated protein 20.2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4890065348902979+
GWHAAZE00000002mRNA4890065348902979+
GWHAAZE00000002exon4890065348900838+
GWHAAZE00000002exon4890181748901969+
GWHAAZE00000002exon4890279048902873+
GWHAAZE00000002exon4890295648902979+
GWHAAZE00000002CDS4890065348900838+
GWHAAZE00000002CDS4890181748901969+
GWHAAZE00000002CDS4890279048902873+
GWHAAZE00000002CDS4890295648902979+
Transcript Sequence

Network for GWHGAAZE007613

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.22Snf7111414.40E-32
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12195CHMP6, VPS20 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034biological_processvacuolar transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.778
SRR3591706second leaf19.931
SRR3591707mature leaf22.406
SRR3591708Shoot apex34.953
SRR3591709Stem52.956
SRR3591710White floral bud57.388
SRR3591711White flower60.473
SRR3591712Green floral bud31.435
SRR3591713Yellow flower56.636
SRP173429 SRR8316895Juvenile bud stage 24.534
SRR8316896Juvenile bud stage 30.967
SRR8316897Juvenile bud stage 14.309
SRR8316894Third green stage 12.273
SRR8316900Third green stage 40.961
SRR8316901Third green stage 35.084
SRR8316898Complete white stage 21.861
SRR8316899Complete white stage 59.972
SRR8316903Complete white stage 30.175
SRR8316902Silver flowering stage31.394
SRR8316904Silver flowering stage35.517
SRR8316905Silver flowering stage15.797
SRR8316906Gold flowering stage 46.934
SRR8316907Gold flowering stage 42.789
SRR8316908Gold flowering stage 54.863
SRP132670SRR6706286Control11.403
SRR6706287Light intensity 50%14.946
SRR6706288Light intensity 20%13.710
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.578
CNS0095593Slightly white alabastrum(diploid) 222.414
CNS0095594Slightly white alabastrum(diploid) 319.506
CNS0095595Whole white alabastrum(diploid) 221.709
CNS0095596Whole white alabastrum(diploid) 317.551
CNS0095597Whole white alabastrum(diploid) 420.339
CNS0095598Silvery flower (diploied) 130.611
CNS0095599Silvery flower (diploied) 231.324
CNS0095600Silvery flower (diploied) 346.903
CNS0095601Golden flower (diploid) 137.993
CNS0095602Golden flower (diploid) 238.550
CNS0095603Golden flower (diploid) 340.462
CNS0095604Slightly white alabastrum(tetraploid) 123.495
CNS0095605Slightly white alabastrum(tetraploid) 218.721
CNS0095606Slightly white alabastrum(tetraploid) 338.650
CNS0095607Whole white alabastrum(tetraploid) 121.624
CNS0095608Whole white alabastrum(tetraploid) 220.584
CNS0095609Whole white alabastrum(tetraploid) 331.559
CNS0095610Silvery flower (tetraploid) 154.982
CNS0095611Silvery flower (tetraploid) 248.167
CNS0095612Silvery flower (tetraploid) 346.901
CNS0095613Golden flower (tetraploid) 137.163
CNS0095614Golden flower (tetraploid) 244.213
CNS0095615Golden flower (tetraploid) 337.680
CRA001975CRR073297Stem 121.569
CRR073298Stem 222.224
CRR073299Stem 321.923
CRR073300Leaf 128.957
CRR073301Leaf 216.809
CRR073302Leaf 318.828
CRR073303Juvenile bud 123.406
CRR073304Juvenile bud 223.087
CRR073305Juvenile bud 315.503
CRR073306Third green 117.911
CRR073307Third green 223.313
CRR073308Third green 317.570
CRR073309Second white 121.888
CRR073310Second white 225.085
CRR073311Second white 313.063
CRR073312Silver flowering 111.989
CRR073313Silver flowering 211.686
CRR073314Silver flowering 310.214
CRR073315Gold flowering 114.110
CRR073316Gold flowering 219.072
CRR073317Gold flowering 313.170
CRR073318Tawny withering 123.917
CRR073319Tawny withering 229.505
CRR073320Tawny withering 335.384