Gene detail

Detail information of GWHGAAZE007578

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010548268.1	3.8245E-125	PREDICTED: rac-like GTP-binding protein ARAC11 [Tarenaya hassleriana]
Swissprot	tr\|Q9SBJ6\|RAC6_ARATH	3E-124	Rac-like GTP-binding protein ARAC6 (Precursor)
trEMBL	tr\|Q9S820\|Q9S820_TOBAC	1E-124	Putative rac protein {ECO:0000313\|EMBL:CAB57818.1}
TAIR10	AT4G35950.1	4E-98	RAC-like 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	48061130	48064083	+
GWHAAZE00000002	mRNA	48061130	48064083	+
GWHAAZE00000002	exon	48061130	48061228	+
GWHAAZE00000002	exon	48061956	48062043	+
GWHAAZE00000002	exon	48062270	48062379	+
GWHAAZE00000002	exon	48062497	48062560	+
GWHAAZE00000002	exon	48063216	48063280	+
GWHAAZE00000002	exon	48063401	48063466	+
GWHAAZE00000002	exon	48063961	48064083	+
GWHAAZE00000002	CDS	48061130	48061228	+
GWHAAZE00000002	CDS	48061956	48062043	+
GWHAAZE00000002	CDS	48062270	48062379	+
GWHAAZE00000002	CDS	48062497	48062560	+
GWHAAZE00000002	CDS	48063216	48063280	+
GWHAAZE00000002	CDS	48063401	48063466	+
GWHAAZE00000002	CDS	48063961	48064083	+

Transcript Sequence
>GWHTAAZE007586 ATGAGCGCTTCGAGGTTCATAAAGTGCGTCACTGTTGGTGATGGCGCTGTTGGAAAGACTTGTTTGTTGATTTCGTATACCAGTAACACCTTTCCCACGGACTATGTGCCGACTGTATTCGACAATTTTAGTGCAAATGTGGTTGTCAATGGTAGCACCGTTAACCTAGGCTTGTGGGACACTGCTGGACAAGAGGATTATAATAGATTAAGACCTTTGAGTTATCGTGGGGCAGATGTTTTCATTTTGGCATTCTCTCTTATTAGTAAAGCCAGTTATGAAAATGTTTCAAAGAAGTGGATTCCAGAACTGAAGCATTATGCCCCCGGCATCCCAATAGTTCTTGTTGGAACAAAACTTGATCTTCGGGACGATAATCAATTCTTTATAGACCATCCTGGTGCTGTGCCCATTTCTGCAATCCAGGGAGAGGAGCTAAAGAAGTTGATAGGGGCACCTGCATACATTGAATGTAGTGCAAAAACACAAGAGAATGTGAAGTCAGTTTTTGATGCCGCCATTAAAGTTGTGCTCCAGCCACCCAAGACAAAAAGAAGAAGGGAAAGGCACAAAAGGCTTGCTCCATATTGTGATGAAGAACACACATATATATAG

Network for GWHGAAZE007578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	8	178	9.30E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	14.144
	SRR3591711	White flower	1.295
	SRR3591712	Green floral bud	38.439
	SRR3591713	Yellow flower	0.127
SRP173429	SRR8316895	Juvenile bud stage	4.953
	SRR8316896	Juvenile bud stage	44.218
	SRR8316897	Juvenile bud stage	23.254
	SRR8316894	Third green stage	18.279
	SRR8316900	Third green stage	57.781
	SRR8316901	Third green stage	64.312
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.036
	SRR8316903	Complete white stage	0.081
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.340
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	16.366
	SRR6706287	Light intensity 50%	16.697
	SRR6706288	Light intensity 20%	14.399
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.336
	CNS0095593	Slightly white alabastrum(diploid) 2	39.170
	CNS0095594	Slightly white alabastrum(diploid) 3	78.679
	CNS0095595	Whole white alabastrum(diploid) 2	63.500
	CNS0095596	Whole white alabastrum(diploid) 3	87.805
	CNS0095597	Whole white alabastrum(diploid) 4	61.500
	CNS0095598	Silvery flower (diploied) 1	0.235
	CNS0095599	Silvery flower (diploied) 2	1.990
	CNS0095600	Silvery flower (diploied) 3	0.398
	CNS0095601	Golden flower (diploid) 1	0.734
	CNS0095602	Golden flower (diploid) 2	0.103
	CNS0095603	Golden flower (diploid) 3	0.081
	CNS0095604	Slightly white alabastrum(tetraploid) 1	86.989
	CNS0095605	Slightly white alabastrum(tetraploid) 2	89.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.129
	CNS0095607	Whole white alabastrum(tetraploid) 1	115.378
	CNS0095608	Whole white alabastrum(tetraploid) 2	107.923
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.200
	CNS0095610	Silvery flower (tetraploid) 1	0.139
	CNS0095611	Silvery flower (tetraploid) 2	0.773
	CNS0095612	Silvery flower (tetraploid) 3	2.315
	CNS0095613	Golden flower (tetraploid) 1	0.241
	CNS0095614	Golden flower (tetraploid) 2	0.163
	CNS0095615	Golden flower (tetraploid) 3	0.655
CRA001975	CRR073297	Stem 1	6.060
	CRR073298	Stem 2	8.070
	CRR073299	Stem 3	5.526
	CRR073300	Leaf 1	15.324
	CRR073301	Leaf 2	13.646
	CRR073302	Leaf 3	7.333
	CRR073303	Juvenile bud 1	7.185
	CRR073304	Juvenile bud 2	6.902
	CRR073305	Juvenile bud 3	0.149
	CRR073306	Third green 1	1.488
	CRR073307	Third green 2	1.214
	CRR073308	Third green 3	1.731
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.754
	CRR073311	Second white 3	0.086
	CRR073312	Silver flowering 1	1.321
	CRR073313	Silver flowering 2	0.794
	CRR073314	Silver flowering 3	0.629
	CRR073315	Gold flowering 1	1.638
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.563
	CRR073318	Tawny withering 1	1.416
	CRR073319	Tawny withering 2	1.480
	CRR073320	Tawny withering 3	1.718