Gene detail

Detail information of GWHGAAZE007571

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008242061.1	PREDICTED: lysosomal alpha-mannosidase [Prunus mume]
Swissprot	tr\|C0HJB3\|MANA_CANEN	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|A0A061DGJ7\|A0A061DGJ7_THECC	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}
TAIR10	AT5G66150.1	Glycosyl hydrolase family 38 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	47941804	47957274	+
GWHAAZE00000002	mRNA	47941804	47957274	+
GWHAAZE00000002	exon	47941804	47941998	+
GWHAAZE00000002	exon	47942128	47942211	+
GWHAAZE00000002	exon	47942993	47943081	+
GWHAAZE00000002	exon	47943167	47943341	+
GWHAAZE00000002	exon	47943589	47943708	+
GWHAAZE00000002	exon	47943808	47943891	+
GWHAAZE00000002	exon	47944105	47944176	+
GWHAAZE00000002	exon	47944264	47944377	+
GWHAAZE00000002	exon	47944778	47944878	+
GWHAAZE00000002	exon	47944978	47945071	+
GWHAAZE00000002	exon	47946633	47946800	+
GWHAAZE00000002	exon	47947361	47947426	+
GWHAAZE00000002	exon	47947513	47947569	+
GWHAAZE00000002	exon	47947895	47948114	+
GWHAAZE00000002	exon	47948730	47948866	+
GWHAAZE00000002	exon	47949539	47949604	+
GWHAAZE00000002	exon	47949709	47949768	+
GWHAAZE00000002	exon	47952097	47952168	+
GWHAAZE00000002	exon	47952344	47952391	+
GWHAAZE00000002	exon	47952550	47952669	+
GWHAAZE00000002	exon	47953229	47953294	+
GWHAAZE00000002	exon	47954254	47954366	+
GWHAAZE00000002	exon	47954467	47954551	+
GWHAAZE00000002	exon	47955258	47955368	+
GWHAAZE00000002	exon	47955446	47955541	+
GWHAAZE00000002	exon	47955645	47955692	+
GWHAAZE00000002	exon	47956142	47956210	+
GWHAAZE00000002	exon	47956766	47957274	+
GWHAAZE00000002	CDS	47941804	47941998	+
GWHAAZE00000002	CDS	47942128	47942211	+
GWHAAZE00000002	CDS	47942993	47943081	+
GWHAAZE00000002	CDS	47943167	47943341	+
GWHAAZE00000002	CDS	47943589	47943708	+
GWHAAZE00000002	CDS	47943808	47943891	+
GWHAAZE00000002	CDS	47944105	47944176	+
GWHAAZE00000002	CDS	47944264	47944377	+
GWHAAZE00000002	CDS	47944778	47944878	+
GWHAAZE00000002	CDS	47944978	47945071	+
GWHAAZE00000002	CDS	47946633	47946800	+
GWHAAZE00000002	CDS	47947361	47947426	+
GWHAAZE00000002	CDS	47947513	47947569	+
GWHAAZE00000002	CDS	47947895	47948114	+
GWHAAZE00000002	CDS	47948730	47948866	+
GWHAAZE00000002	CDS	47949539	47949604	+
GWHAAZE00000002	CDS	47949709	47949768	+
GWHAAZE00000002	CDS	47952097	47952168	+
GWHAAZE00000002	CDS	47952344	47952391	+
GWHAAZE00000002	CDS	47952550	47952669	+
GWHAAZE00000002	CDS	47953229	47953294	+
GWHAAZE00000002	CDS	47954254	47954366	+
GWHAAZE00000002	CDS	47954467	47954551	+
GWHAAZE00000002	CDS	47955258	47955368	+
GWHAAZE00000002	CDS	47955446	47955541	+
GWHAAZE00000002	CDS	47955645	47955692	+
GWHAAZE00000002	CDS	47956142	47956210	+
GWHAAZE00000002	CDS	47956766	47956954	+
GWHAAZE00000002	three_prime_UTR	47956955	47957274	+

Transcript Sequence
>GWHTAAZE007579 ATGGGAATTCCAGCTTTTGTATGTGTACTTTTTGTTCTTTGTTCATTTGGGGATGTTAATGGGTATGGATATGATACTAGAGCTGGAATTGTTGAAGGGAAATTGAATGTTCATTTGGTTCCTCATTCTCATGATGATGTGGGGTGGTTGAAGACAGTTGATCAGTACTATGTTGGTTCAAATAATAGTATTCAGGGTGCTTGTGTGGAGAATACGCTTGATTCAGTTTTTGACTCATTGCGCCGTGATCCAAATAGGAAGTTTGTGTTTGCTGAAATGGCCTTTTTTCAACGATGGTGGAATACGCAAAGTCCAGAGACGCAAGAAGAAGTGAAAAAGTTTGTCAATGCTGGTCAATTTGAGTTTGTAAACGGTGGCTGGTGTATGCATGACGAAGCATCTACCCATTACATAGACATGATTGACCAAACAACTCTAGGTCATTTGGCGATAAAGAGCCAATTTAACAAAACTCCTCGTGCTGGATGGCAGATCGATCCGTTTGGCCACTCTGCTGTACAAGCTTACCTACTTGGAGCTGAGCTTGGCTTCGACTCTGTGCATTTTGCACGGATTGATTATCAGGACAGAGCAAAGCGCAAAGCTGATAAATCTCTTGAAGTTGTATGGCGTGGGTCCAAAACTTTTGGTTCCTCATCTCAGATCTTCGCCAACGCATTTCCTGTTCATTATAGTCCCCCGACTGGTTTCCATTTCGAAGTGTTTGATGATATCGTTCCCGTTCAGGATAATCCTCTTATATTTGACTACAATGTTCAAGAACGAGTTAATGATTTTATTAATGCTGCAATTACTCAAGCAAATATTACACGCACTAATCACGTTATGTGGACAATGGGTGATGACTTTCAATACCAATATGCAGAGTCTTGGTTCAAGCAAATGGACAAGTTAATTCACTATGTTAACAAGGACGGTCAAGTGAATGCATTATATTCCACCCCATCTATCTACACTGATGTAAAAAATGCTGCAAATTTAGCCTGGCCATTGAAAACTGATGACTACTTCCCATATGCAGACCGCGCAAATGCTTATTGGACTGGTTATTTTACTAGTCGCCCAGCCTTGAAGGGATATATTCGTATGCTGAGTGGATATTATATGGCTGCACGCCAGCTGGAATTCCTGGTTGGAAGGAGATCTGCTGGTCCCCACACTTTTAGTTTAGGAGACGCTTTGGGAATCGGACAGCATCATGATGCTATCACTGGTACTGCTAAACAACATACCACAAACGACTATGGAAAACGCTTGGCAATTGGTGCTACCGAGTGTCAATTACTCAATATAAGTTACTGCCCTCCCACCGAGGAAGATATTCCTGCAGGAAAGAGTTTGGTCGTTGTGGCATATAACTCTCTTGGATGGATTCGTACTGACATTATCAAGATTCCTGTTAAAGAAGCAAACCTTATTGTCCAAGATTCCGCGGGTAATAAGATTGAGACACAGTTTGTGGCATTGGATAATGTTACAAACAACCTAAGAAATTTCTACACCAAAGCTTATGTGGGAATTTCACCCAAAGATTCTCCCAAGTACTGGCTATTGTTTCAAGCTACTGTTCCACCCTTGGGTTGGAACACCTACTTTGTTTCTAAAGTAACTGGAGCAGGTAAAAGAAGAGAAAGGTATATGTCTGCCACAGATGCACCACAGAATGACACTGTTGAAATTGGACCAGGAAGCTTGAAGATGTCCTTTTCTTTAACTTCTGGACAACTTTCCCGGTTTTCTAATTCCAAAACAGGGGCTGATATCCCTGTACAACAGAGCTATCTCTGGTATGGATCAAGTGATGGAGGTACGGATTCACAGCCTTCTGGTGCATATATTTTCCGACCTAATGGTTCACCTCCAGTTATTACTTCAAGATCAGTTCCCTTGAAGATCATTCGTGGACCACTAGTTGACGAAGTTCACCAGCAGTTCAGCCCATGGATCTATCAGGTGATTAGACTCTACAAAGATAAAGATCATGCTGAATTTGAATTCACTGTCGGTCCAATCCCCACGGACGATGATATTGGGAAGGAGGTCATTACGAGAATTACAGCTAATATGGTCACAGAGAAGGTGTTTTATACTGATTCCAACGGGAGGGACTTTCTAAAGCGGGTTCGAGATTATAGAGAGGATTGGAATCTTTCAGTTAATCAACCTGTAGCAGGGAACTATTACCCAGTGAATCTTGGAATTTTCACAACGGATAAGAAATCTGAACTGTCAATCTTGGTTGACCGTGCCATCGGTGGTGGCAGCATTAAAGATGGACAACTAGAACTGATGCTCCACAGGCGTACGATCTATGATGATAGTAGAGGAGTCGGTGAACCCCTTGATGAGATAGTGTGTGTTGAGGGTACCTGTGAAGGACTTACGGTTCGAGGAAATTATTATATGAGTGTCAATCAGTTTGGTGCTGGATCACGCTGGCGCCGAGTGACTGGCCAAGAAATTTACTCTCCCCTTCTATTAGCTTTTACACATGAGAAACTGGAAGACTGGAAAGCATCTCATTTGACAATGGCATCAACCATGGAGTCCAACTACAGTTTACCTCTTAATGTTGCTCTGGTTACTCTTCAGGAGTTGGATGATGGAAATGTGCTCCTCCGTTTGGCACATCTGTTCGAGGCTGGTGAAGATGCCAATTATTCAACATTAGCCAAGGTTGAACTGAAGAAAATGTTTGCAGGCAAAACGATAACAATGATTAAGGAAACGAGCTTATCGGCAAATCAAGACAAGTCAGCAATGAAAACAATGGCATGGAAGGTTGAAGGAGACAACGGAGGTGCGCCCGCACCAATGAAAGGCGGCCCCGTAAATGCGTCAACGCTTATTGTCGAGCTTGGTCCCATGGAGATTCGCACTTTCCTCTTGAAATTTTAAACCGAGTCTCGGCCTCAAGTCTCTGCATATGCAGTCTTCAAAGCTCCAGTCTTGTAGTAGTACTTGTTGAACAAAAAATTGTGTATATTTCCATGATTGGAGTTTTGTTTGGGGGAGATTGGGTAGATTTATCGCGGTGTCTAATTTAATTGACAAATAAAAGGGGCTGTTGTATTTATAAATAAAGCCATTTGGCCATTTGATTTTTGATGTAGACAGTCCAACAAGAGATGTATTTGCCTTTTGATATTGTAACCAAACAATAAATCATGAATGTGGTAGGCAAGCCTTAATAAAGCTTTTGAATTGTTACTTTAAGA

Network for GWHGAAZE007571

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.23	Glyco_hydro_38N	36	347	1.10E-91
PF09261.12	Alpha-mann_mid	352	434	3.70E-16
PF07748.14	Glyco_hydro_38C	569	782	1.10E-48
PF17677.2	Glyco_hydro38C2	864	969	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01191	MAN2C1	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0006013	biological_process	mannose metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004559	molecular_function	alpha-mannosidase activity
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.956
	SRR3591706	second leaf	4.966
	SRR3591707	mature leaf	2.944
	SRR3591708	Shoot apex	4.039
	SRR3591709	Stem	5.484
	SRR3591710	White floral bud	5.993
	SRR3591711	White flower	4.548
	SRR3591712	Green floral bud	10.394
	SRR3591713	Yellow flower	1.554
SRP173429	SRR8316895	Juvenile bud stage	3.317
	SRR8316896	Juvenile bud stage	6.185
	SRR8316897	Juvenile bud stage	1.892
	SRR8316894	Third green stage	2.441
	SRR8316900	Third green stage	8.727
	SRR8316901	Third green stage	6.465
	SRR8316898	Complete white stage	0.891
	SRR8316899	Complete white stage	5.548
	SRR8316903	Complete white stage	2.219
	SRR8316902	Silver flowering stage	0.806
	SRR8316904	Silver flowering stage	1.007
	SRR8316905	Silver flowering stage	0.498
	SRR8316906	Gold flowering stage	0.859
	SRR8316907	Gold flowering stage	1.023
	SRR8316908	Gold flowering stage	1.530
SRP132670	SRR6706286	Control	3.410
	SRR6706287	Light intensity 50%	3.327
	SRR6706288	Light intensity 20%	3.558
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.433
	CNS0095593	Slightly white alabastrum(diploid) 2	2.489
	CNS0095594	Slightly white alabastrum(diploid) 3	2.435
	CNS0095595	Whole white alabastrum(diploid) 2	2.579
	CNS0095596	Whole white alabastrum(diploid) 3	4.117
	CNS0095597	Whole white alabastrum(diploid) 4	2.685
	CNS0095598	Silvery flower (diploied) 1	4.695
	CNS0095599	Silvery flower (diploied) 2	4.024
	CNS0095600	Silvery flower (diploied) 3	1.382
	CNS0095601	Golden flower (diploid) 1	4.314
	CNS0095602	Golden flower (diploid) 2	1.911
	CNS0095603	Golden flower (diploid) 3	1.682
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.265
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.477
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.142
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.936
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.485
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.125
	CNS0095610	Silvery flower (tetraploid) 1	2.555
	CNS0095611	Silvery flower (tetraploid) 2	1.950
	CNS0095612	Silvery flower (tetraploid) 3	5.529
	CNS0095613	Golden flower (tetraploid) 1	0.216
	CNS0095614	Golden flower (tetraploid) 2	0.858
	CNS0095615	Golden flower (tetraploid) 3	0.392
CRA001975	CRR073297	Stem 1	12.822
	CRR073298	Stem 2	13.658
	CRR073299	Stem 3	9.191
	CRR073300	Leaf 1	11.534
	CRR073301	Leaf 2	13.658
	CRR073302	Leaf 3	17.424
	CRR073303	Juvenile bud 1	11.278
	CRR073304	Juvenile bud 2	5.041
	CRR073305	Juvenile bud 3	11.310
	CRR073306	Third green 1	1.530
	CRR073307	Third green 2	0.932
	CRR073308	Third green 3	2.123
	CRR073309	Second white 1	0.398
	CRR073310	Second white 2	0.411
	CRR073311	Second white 3	0.406
	CRR073312	Silver flowering 1	0.121
	CRR073313	Silver flowering 2	0.073
	CRR073314	Silver flowering 3	0.168
	CRR073315	Gold flowering 1	34.975
	CRR073316	Gold flowering 2	27.008
	CRR073317	Gold flowering 3	27.867
	CRR073318	Tawny withering 1	1.413
	CRR073319	Tawny withering 2	1.595
	CRR073320	Tawny withering 3	3.580