Detail information of GWHGAAZE007554


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009363482.11.68553E-61PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Pyrus x bretschneideri]
Swissprottr|P55034|PSMD4_ARATH1E-2426S proteasome non-ATPase regulatory subunit 4 homolog
trEMBLtr|I1JCG0|I1JCG0_SOYBN1E-59Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G05250.2}
TAIR10AT4G38630.13E-11regulatory particle non-ATPase 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4743249547439566-
GWHAAZE00000002mRNA4743249547439566-
GWHAAZE00000002exon4743936047439566-
GWHAAZE00000002exon4743334247433465-
GWHAAZE00000002exon4743294647433049-
GWHAAZE00000002exon4743249547432563-
GWHAAZE00000002CDS4743936047439566-
GWHAAZE00000002CDS4743334247433465-
GWHAAZE00000002CDS4743294647433049-
GWHAAZE00000002CDS4743249547432563-
Transcript Sequence

Network for GWHGAAZE007554

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02809.21UIM71860.0068
PF02809.21UIM1041190.0038
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03029PSMD4, RPN10 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.417
SRR3591706second leaf11.431
SRR3591707mature leaf7.168
SRR3591708Shoot apex13.223
SRR3591709Stem3.990
SRR3591710White floral bud14.755
SRR3591711White flower19.783
SRR3591712Green floral bud22.724
SRR3591713Yellow flower17.121
SRP173429 SRR8316895Juvenile bud stage 22.186
SRR8316896Juvenile bud stage 34.598
SRR8316897Juvenile bud stage 11.879
SRR8316894Third green stage 11.667
SRR8316900Third green stage 36.765
SRR8316901Third green stage 40.030
SRR8316898Complete white stage 12.844
SRR8316899Complete white stage 34.315
SRR8316903Complete white stage 16.321
SRR8316902Silver flowering stage10.258
SRR8316904Silver flowering stage13.442
SRR8316905Silver flowering stage9.639
SRR8316906Gold flowering stage 27.621
SRR8316907Gold flowering stage 27.865
SRR8316908Gold flowering stage 23.835
SRP132670SRR6706286Control31.989
SRR6706287Light intensity 50%35.398
SRR6706288Light intensity 20%37.465
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.986
CNS0095593Slightly white alabastrum(diploid) 232.688
CNS0095594Slightly white alabastrum(diploid) 327.042
CNS0095595Whole white alabastrum(diploid) 221.152
CNS0095596Whole white alabastrum(diploid) 324.284
CNS0095597Whole white alabastrum(diploid) 423.564
CNS0095598Silvery flower (diploied) 126.366
CNS0095599Silvery flower (diploied) 220.574
CNS0095600Silvery flower (diploied) 322.659
CNS0095601Golden flower (diploid) 121.612
CNS0095602Golden flower (diploid) 218.488
CNS0095603Golden flower (diploid) 319.948
CNS0095604Slightly white alabastrum(tetraploid) 119.892
CNS0095605Slightly white alabastrum(tetraploid) 220.723
CNS0095606Slightly white alabastrum(tetraploid) 322.972
CNS0095607Whole white alabastrum(tetraploid) 111.832
CNS0095608Whole white alabastrum(tetraploid) 29.015
CNS0095609Whole white alabastrum(tetraploid) 318.059
CNS0095610Silvery flower (tetraploid) 116.342
CNS0095611Silvery flower (tetraploid) 214.370
CNS0095612Silvery flower (tetraploid) 314.292
CNS0095613Golden flower (tetraploid) 17.941
CNS0095614Golden flower (tetraploid) 216.478
CNS0095615Golden flower (tetraploid) 39.508
CRA001975CRR073297Stem 141.970
CRR073298Stem 239.822
CRR073299Stem 337.144
CRR073300Leaf 147.042
CRR073301Leaf 244.317
CRR073302Leaf 330.158
CRR073303Juvenile bud 127.859
CRR073304Juvenile bud 234.913
CRR073305Juvenile bud 331.684
CRR073306Third green 111.513
CRR073307Third green 214.467
CRR073308Third green 315.444
CRR073309Second white 125.748
CRR073310Second white 219.573
CRR073311Second white 318.050
CRR073312Silver flowering 110.636
CRR073313Silver flowering 213.853
CRR073314Silver flowering 313.112
CRR073315Gold flowering 115.006
CRR073316Gold flowering 226.574
CRR073317Gold flowering 316.555
CRR073318Tawny withering 134.118
CRR073319Tawny withering 232.984
CRR073320Tawny withering 325.285