Gene detail

Detail information of GWHGAAZE007524

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649029.1	0	PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X3 [Vitis vinifera]
trEMBL	tr\|A0A068U0P3\|A0A068U0P3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01897.1}
TAIR10	AT4G36050.2	4E-112	endonuclease/exonuclease/phosphatase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46901302	46910926	+
GWHAAZE00000002	mRNA	46901302	46910926	+
GWHAAZE00000002	exon	46901302	46901320	+
GWHAAZE00000002	exon	46901941	46902168	+
GWHAAZE00000002	exon	46902343	46902428	+
GWHAAZE00000002	exon	46903604	46903719	+
GWHAAZE00000002	exon	46903818	46903898	+
GWHAAZE00000002	exon	46904388	46904594	+
GWHAAZE00000002	exon	46905486	46905637	+
GWHAAZE00000002	exon	46908736	46909286	+
GWHAAZE00000002	exon	46910688	46910926	+
GWHAAZE00000002	CDS	46901302	46901320	+
GWHAAZE00000002	CDS	46901941	46902168	+
GWHAAZE00000002	CDS	46902343	46902428	+
GWHAAZE00000002	CDS	46903604	46903719	+
GWHAAZE00000002	CDS	46903818	46903898	+
GWHAAZE00000002	CDS	46904388	46904594	+
GWHAAZE00000002	CDS	46905486	46905637	+
GWHAAZE00000002	CDS	46908736	46909286	+
GWHAAZE00000002	CDS	46910688	46910771	+
GWHAAZE00000002	three_prime_UTR	46910772	46910926	+

Transcript Sequence
>GWHTAAZE007532 ATGTTGTTTGGGCAGATGGGTGTTGCGACATTTTGCCGTGTAAAGTCTGCATTTTCGAGCAATGAAGTGGCTTTGCCACTTGACGCAGAGGAGGGATTTACTGGTATTCTTGATAGTTCTCGAGGATTTGGAATCAAACAAGATGAAATTCCTACAATAGTGGAAGGGCTTGAGGAGTTTGGGAGAGATGAACTTCATAAAGTTGACAGCGAGGGGCGGTGTATCATCACTGATCATGGCCATTTTGTTCTTTTCAATATATACGGGCCTCGAGCTGACCCTGATGATACAGACAGAATCCACTTTAAGCTCACATTTTTCAAGATATTACAGAGAAGATGGGAGTGTCTCCAACGTCAAGGACGAAGGGTATTCATTGTTGGTGATCTCAACATCGCCCCTGCTGCTATAGACCGCTGTGATGCAGGGAAAGATTTTGAGAAAAATGAGTTCAGAAGATGGTTTAGATCTTTGCTAATGGAAAGTGGAGGCCCATTTTATGATGTCTTCAGGGCGAAACACCCTGAGAGAAGAGAAGCGTATACTTGCTGGTCAACAAGCACAGGTGCTGAGATATTTAATTTTGGGTCAAGGATTGACCACATTCTCTGTGCTGGATCATGCTTACATGAAGAGGACAAGTTGGAAGATCATAACTTTATAACTTGCCATGTTGAAGAATGCGATATTTTGACACATTTTAAACGGTGGAAACCTGGAAATACACAAAGTACAAGGTGGAAAGGAGGAAGAAGCATCAAGTTAGAAGGTTCTGATCATGCTCCTGTCTGTATGAGATTAAAGGAAATCCCCGATGTTTTGCAACATAGCACTCCGTCTTTATCTAGTAGATACTGTCCTCAGGTTCAAGGGTGTCAGCAAACTCTTGTGTCAATGTTAATGAAAATGCAATCGGCGGAGCAAGCTAAAAACAGTTTTGTTTTGGATGAAAATACTACAAAAGAGGGCTCTTGCAGTTTGTCTGGTGTATCCTCGTTTGAAATTTTAGCTTCAAACCAAAAACTAGAAAGTGATGTTTTAAGAACAGATGAGTGCTCCCAAGAAACAAAGAAAAAAGCAAGACAAAGTCAATTATCCCAGCTCTCTCTTAGATCGTTTTTCAAAAAGAGTTCAAATCATAATGATAGTGTTAATGGGTCTGGTACGGATATATCGATAAATCGGGCCGACATCTCTGGTTCTAACCCTAATTCTAGTGGAACTCCTGTGGATAATGATGAAATGAATACTACAAAGGGGTCGAATTCTTTAGAAAAGAAGAAAAGGAATGTTGCTTTAGTTGAGTGGCAAAGGATTCAGCAACTCATGCAGAATAGCATACCAATGTGCAATGGCCATAAGGAACCTTGTGTTGATCGGGTTGTGAAGAAAGCGGGGCCTAATTTGGGTCGAAGATTTTATGTCTGTGCTCGTGCTGAGGGACCTTCATCGAACCCTGAAGCAAATTGTGGTTACTTTAAATGGGCTGATTTGAAATCTAAGCGCAAACAAGGACGTGACTGATCTTTGTTACTTTCTTTGTAGAAGTATGGTCTTTATCTTTTTCTTCTTTTTGTTTATATTGCTTGTAGCATTTTGGTTTTGATCATTGTGAGATTTAGTGTTGTATAACGAGGGTTAGAAAATCATTTGAAATGTAATTATGTTTGTGTTTTCAT

Network for GWHGAAZE007524

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03372.24	Exo_endo_phos	94	218	1.10E-08
PF06839.13	zf-GRF	448	498	3.20E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10772	APEX2	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0008270	molecular_function	zinc ion binding
GO:0004518	molecular_function	nuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.632
	SRR3591706	second leaf	9.614
	SRR3591707	mature leaf	7.927
	SRR3591708	Shoot apex	16.093
	SRR3591709	Stem	10.907
	SRR3591710	White floral bud	8.965
	SRR3591711	White flower	8.490
	SRR3591712	Green floral bud	11.812
	SRR3591713	Yellow flower	7.211
SRP173429	SRR8316895	Juvenile bud stage	8.543
	SRR8316896	Juvenile bud stage	13.266
	SRR8316897	Juvenile bud stage	6.432
	SRR8316894	Third green stage	4.875
	SRR8316900	Third green stage	14.354
	SRR8316901	Third green stage	11.755
	SRR8316898	Complete white stage	3.826
	SRR8316899	Complete white stage	15.939
	SRR8316903	Complete white stage	7.588
	SRR8316902	Silver flowering stage	2.898
	SRR8316904	Silver flowering stage	6.174
	SRR8316905	Silver flowering stage	2.766
	SRR8316906	Gold flowering stage	7.208
	SRR8316907	Gold flowering stage	7.002
	SRR8316908	Gold flowering stage	6.060
SRP132670	SRR6706286	Control	7.348
	SRR6706287	Light intensity 50%	7.209
	SRR6706288	Light intensity 20%	7.887
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.672
	CNS0095593	Slightly white alabastrum(diploid) 2	10.617
	CNS0095594	Slightly white alabastrum(diploid) 3	8.937
	CNS0095595	Whole white alabastrum(diploid) 2	12.213
	CNS0095596	Whole white alabastrum(diploid) 3	10.668
	CNS0095597	Whole white alabastrum(diploid) 4	12.424
	CNS0095598	Silvery flower (diploied) 1	8.242
	CNS0095599	Silvery flower (diploied) 2	9.845
	CNS0095600	Silvery flower (diploied) 3	8.751
	CNS0095601	Golden flower (diploid) 1	8.210
	CNS0095602	Golden flower (diploid) 2	8.042
	CNS0095603	Golden flower (diploid) 3	6.654
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.965
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.892
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.641
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.929
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.751
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.086
	CNS0095610	Silvery flower (tetraploid) 1	11.178
	CNS0095611	Silvery flower (tetraploid) 2	9.024
	CNS0095612	Silvery flower (tetraploid) 3	6.929
	CNS0095613	Golden flower (tetraploid) 1	5.554
	CNS0095614	Golden flower (tetraploid) 2	8.976
	CNS0095615	Golden flower (tetraploid) 3	7.162
CRA001975	CRR073297	Stem 1	6.835
	CRR073298	Stem 2	6.397
	CRR073299	Stem 3	5.052
	CRR073300	Leaf 1	6.883
	CRR073301	Leaf 2	5.229
	CRR073302	Leaf 3	4.631
	CRR073303	Juvenile bud 1	4.656
	CRR073304	Juvenile bud 2	1.880
	CRR073305	Juvenile bud 3	2.879
	CRR073306	Third green 1	0.629
	CRR073307	Third green 2	0.993
	CRR073308	Third green 3	0.654
	CRR073309	Second white 1	1.290
	CRR073310	Second white 2	1.753
	CRR073311	Second white 3	1.304
	CRR073312	Silver flowering 1	1.261
	CRR073313	Silver flowering 2	0.612
	CRR073314	Silver flowering 3	0.531
	CRR073315	Gold flowering 1	2.311
	CRR073316	Gold flowering 2	3.742
	CRR073317	Gold flowering 3	1.021
	CRR073318	Tawny withering 1	5.768
	CRR073319	Tawny withering 2	5.294
	CRR073320	Tawny withering 3	5.957