Gene detail

Detail information of GWHGAAZE007522

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006383102.1	0	hypothetical protein POPTR_0005s11560g [Populus trichocarpa]
Swissprot	tr\|Q7XJR9\|CDPKG_ARATH	0	Calcium-dependent protein kinase 16
trEMBL	tr\|B9MXG0\|B9MXG0_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP60899.1}
TAIR10	AT2G17890.1	5E-151	calcium-dependent protein kinase 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46848110	46856993	+
GWHAAZE00000002	mRNA	46848110	46856993	+
GWHAAZE00000002	exon	46848110	46848544	+
GWHAAZE00000002	exon	46849657	46849787	+
GWHAAZE00000002	exon	46850023	46850064	+
GWHAAZE00000002	exon	46850166	46850277	+
GWHAAZE00000002	exon	46850363	46850441	+
GWHAAZE00000002	exon	46851355	46851723	+
GWHAAZE00000002	exon	46852302	46852471	+
GWHAAZE00000002	exon	46852654	46852780	+
GWHAAZE00000002	exon	46854770	46854885	+
GWHAAZE00000002	exon	46854980	46855087	+
GWHAAZE00000002	exon	46855249	46855311	+
GWHAAZE00000002	exon	46855933	46856106	+
GWHAAZE00000002	exon	46856835	46856993	+
GWHAAZE00000002	CDS	46848110	46848544	+
GWHAAZE00000002	CDS	46849657	46849787	+
GWHAAZE00000002	CDS	46850023	46850064	+
GWHAAZE00000002	CDS	46850166	46850277	+
GWHAAZE00000002	CDS	46850363	46850441	+
GWHAAZE00000002	CDS	46851355	46851723	+
GWHAAZE00000002	CDS	46852302	46852471	+
GWHAAZE00000002	CDS	46852654	46852780	+
GWHAAZE00000002	CDS	46854770	46854885	+
GWHAAZE00000002	CDS	46854980	46855087	+
GWHAAZE00000002	CDS	46855249	46855311	+
GWHAAZE00000002	CDS	46855933	46856106	+
GWHAAZE00000002	CDS	46856835	46856993	+

Transcript Sequence
>GWHTAAZE007530 ATGGGTATCTGTTTCTCAGCCACAAAGATCAGTGGCTCAAACAGCACCACCCCCTCCACCTCCACCGCCACCGCCGCATCCGCCGCCACCACTACCACCACCACCACCACCACTAACCGGAGCAAAGCACCGGCAACAACAAGCACCGGTACGAAATACGGGTCGAATTATAATTACCATAAAACGAATGAGGGCCACAAGAATCATCATCAAGAACATAGGAATGCTCAGCAGCAGAAGAACAAGACAAGTTCGAAGCGTCAATGCACTGTAATTCCGTGTGGGAAAAGGACTGATTTTGGGTACCAAAAGGATTTCGATAAGAAATACACAATTGGGAAATTGTTAGGCCACGGTCAATTTGGGTATACATATGTTGCTACTGATAAGATTAGTGGCGATCGCGTTGCTGTTAAGAAAATTGATAAAAATAAGATGATTCTTCCCATTGCTGTTGAGGATGTTAAGCGGGAAGTCCAAATATTGCAAGCCTTAAGTGGCCATGAGAATGTTGTCCAATTTTATAATGCATTTGATGACGATTCTTACGTGTATATAGTAATGGAGTTATGCGAGGGTGGTGAATTGCTGGACCGGATATTGGCCAAAAAAGATAGCCGTTATACTGAGAAAGATGCAGCAAGAGTTGTGAGACAGATGCTGAAAGTTGCAGCTGAGTGTCATTTGCATGGTTTGGTACACCGTGATATGAAACCAGAGAATTTTCTTTTCAAGTCAAAAAAAGAGGATTCGCCATTAAAGGCTACAGATTTTGGTCTGTCAGATTTTATAAAACCGGAACCCATCAAAACCTTCGTCACCCAAACCCCCTGCCTCATCGACACCTGGATCTCTGACATACACAGCCTATACTACCACTGCCTCCACCACCACAATCTCATCGCCGGCCTCGACATCGAGTGGCACCCCACCTTCGACCCCAACTGCCAAAACCCTCCCGCCACTCTCCAGCTCTGCGTCGGCCACAATTGCCTCATCTTCCAACTCCTCTTTGCCCCCCATATCCCCCAATCCCTCCGAAACTTCCTTGCCAATGCAGATTTCACCTTCGTCGGCATCGGGATCAACCGCAATGTTCAGAAACTCTACAGTTGGTATGGATTGGAGGAGCAGACACGGATCATTATTGATTCTGCTGCCATGGCTGGGAGGAAATTTCATGATATTGTTGGGAGTGCCTACTATGTTGCTCCTGAAGTTTTGAAACGCAAATCGGGGCCCGAGTCAGATGTGTGGAGTATTGGTGTAATTACGTACATATTACTCTGTGGGCGGCGTCCATTCTGGGATAAAACTGAGGACGGCATATTCAAAGAGGTTTTAAGAAACAAGCCTGATTTTCGACGCAAACCATGGCCAAGCATAAGCATCAGCGCTAAAGATTTTGTGAAAAAATTGCTAGTGAAGGATCCTCGTGCCAGACTTACTGCTGCTCAAGCCCTCTCTCACCCATGGGTTAGAGAAGGGGGAGACGCATCAGAGATTCCTCTGGACATTTCGGTTCTGTTCAATATGCGGCAATTTGTGAAATACAGTCGTTTGAAACAGTTTGCTTTGCGGGCATTGGCTAGTTCACTTGGTGACGAGGAGTTATCTGATCTACGGGATCAATTTCATGCAATTGATGTGGATAAAAATGGTGCTATTAGTCTTGAAGAAATGAGACAGGCCCTGGCTAAAGATCTTCCTTGGCAGTTGAAGGAATCGCGTGTTTTAGAGATTCTACAAGCGATCGACAGTAACACTGACGGGCTTGTGGATTTCCCAGAGTTTGTAGCAGCAACTCTTCATGTCCATCAATTAGAGGAACATAACATGGAAAAGTGGCAGCAAGTATCTCAAGCTGCTTTCGAAAAATTTGATGTTGATAGAGATGGATATATAACCCCTGAAGAACTTAGAATGCACACTGGCTTAAGAGGCTCGATAGACCCCTTATTAGAGGAGGCCGACATCGACAAAGATGGGAGGATAAGCTTGTCAGAGTTTCGTAGGCTTCTTAGAACTGCAAGCATGGGAAATGTAAGTAGTCCCTCTGGCCAACGAGCTTCCCGGAGAATGTAG

Network for GWHGAAZE007522

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	110	273	7.30E-38
PF00069.26	Pkinase	391	493	2.30E-23
PF13499.7	EF-hand_7	539	602	2.30E-08
PF13499.7	EF-hand_7	621	674	4.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	96.581
	SRR3591706	second leaf	15.712
	SRR3591707	mature leaf	17.515
	SRR3591708	Shoot apex	37.042
	SRR3591709	Stem	69.629
	SRR3591710	White floral bud	25.177
	SRR3591711	White flower	28.846
	SRR3591712	Green floral bud	23.914
	SRR3591713	Yellow flower	22.833
SRP173429	SRR8316895	Juvenile bud stage	56.942
	SRR8316896	Juvenile bud stage	60.223
	SRR8316897	Juvenile bud stage	83.178
	SRR8316894	Third green stage	10.471
	SRR8316900	Third green stage	23.989
	SRR8316901	Third green stage	26.086
	SRR8316898	Complete white stage	11.238
	SRR8316899	Complete white stage	54.881
	SRR8316903	Complete white stage	20.612
	SRR8316902	Silver flowering stage	17.446
	SRR8316904	Silver flowering stage	17.656
	SRR8316905	Silver flowering stage	9.774
	SRR8316906	Gold flowering stage	35.863
	SRR8316907	Gold flowering stage	27.179
	SRR8316908	Gold flowering stage	40.000
SRP132670	SRR6706286	Control	24.419
	SRR6706287	Light intensity 50%	28.902
	SRR6706288	Light intensity 20%	25.179
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.199
	CNS0095593	Slightly white alabastrum(diploid) 2	38.681
	CNS0095594	Slightly white alabastrum(diploid) 3	47.140
	CNS0095595	Whole white alabastrum(diploid) 2	37.851
	CNS0095596	Whole white alabastrum(diploid) 3	15.864
	CNS0095597	Whole white alabastrum(diploid) 4	28.253
	CNS0095598	Silvery flower (diploied) 1	40.713
	CNS0095599	Silvery flower (diploied) 2	47.873
	CNS0095600	Silvery flower (diploied) 3	47.158
	CNS0095601	Golden flower (diploid) 1	88.951
	CNS0095602	Golden flower (diploid) 2	76.997
	CNS0095603	Golden flower (diploid) 3	74.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.881
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.740
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.778
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.632
	CNS0095610	Silvery flower (tetraploid) 1	29.829
	CNS0095611	Silvery flower (tetraploid) 2	22.911
	CNS0095612	Silvery flower (tetraploid) 3	30.402
	CNS0095613	Golden flower (tetraploid) 1	17.800
	CNS0095614	Golden flower (tetraploid) 2	24.606
	CNS0095615	Golden flower (tetraploid) 3	28.313
CRA001975	CRR073297	Stem 1	32.497
	CRR073298	Stem 2	27.543
	CRR073299	Stem 3	22.643
	CRR073300	Leaf 1	31.663
	CRR073301	Leaf 2	22.724
	CRR073302	Leaf 3	26.583
	CRR073303	Juvenile bud 1	25.406
	CRR073304	Juvenile bud 2	13.171
	CRR073305	Juvenile bud 3	30.734
	CRR073306	Third green 1	18.097
	CRR073307	Third green 2	15.705
	CRR073308	Third green 3	18.820
	CRR073309	Second white 1	15.787
	CRR073310	Second white 2	15.249
	CRR073311	Second white 3	18.128
	CRR073312	Silver flowering 1	24.787
	CRR073313	Silver flowering 2	22.986
	CRR073314	Silver flowering 3	22.164
	CRR073315	Gold flowering 1	16.649
	CRR073316	Gold flowering 2	31.787
	CRR073317	Gold flowering 3	21.222
	CRR073318	Tawny withering 1	56.659
	CRR073319	Tawny withering 2	94.999
	CRR073320	Tawny withering 3	66.115