Gene detail

Detail information of GWHGAAZE007505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611977.1	2.4438E-116	PREDICTED: barley B recombinant-like protein D [Nicotiana tomentosiformis]
Swissprot	tr\|Q8L999\|BPC6_ARATH	2E-86	Protein BASIC PENTACYSTEINE6
trEMBL	tr\|H1ZN84\|H1ZN84_TOBAC	1E-116	GAGA-binding transcriptional activator {ECO:0000313\|EMBL:ADV59384.1}
TAIR10	AT5G42520.2	9E-69	basic pentacysteine 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46570631	46573525	+
GWHAAZE00000002	mRNA	46570631	46573525	+
GWHAAZE00000002	exon	46570631	46571104	+
GWHAAZE00000002	exon	46573145	46573525	+
GWHAAZE00000002	CDS	46570631	46571104	+
GWHAAZE00000002	CDS	46573145	46573525	+

Transcript Sequence
>GWHTAAZE007513 ATGGCCATCATGGCCGAGAGGGATGCTGCCATCCGAGAACGGAACATGGCACTGGAGGAGAGAAAAAGAGCCTTTGCGGAGCGCGATATGGCAATGTTACAACGGGACACAGCTCTATCAGAGCGAAACTCTGCCATACAGGAACGGAACGACGCAATTTCAACCCTCCGATACCGGGGGAGTTCGATGAATGACGGTAACAACATGACAACCATTGACTTACCCGGAGGAAATGGAGCAAAACAAGAGCACGATGACCATCACCAAATGAATCACATGTTTGACCTAGCCGAAGTTAAGTACAATCAGAGGGAAGTCAACAGAAGCGAAGGCTTTCACCACCTCACTGAAGCTCCGACCGAGACTCCCAAGCCGAGGAAGGTGAAGCGAGCAAAGGAGAACAAACCCTCATCAACGAAGTCAGCAAAGATGCCAAGGATTGTTTCAAAAGGGTCCGAACGTTTCAGTAAACAGGAATTTGGTGGGGATGATGAGGAAGACCTAGGCGGTCAGAATGTACAATGGAAAGATAACTTGGGGTTAAACCAAGTAAACTTTGACGAGACGTCCATGCCGGTCCCAGTTTGCTCATGCACTGGGGTACCCCAACCCTGCTACAAGTGGGGCAATGGCGGGTGGCAGTCGGCTTGTTGCACGACCACCATGTCAATGTATCCTTTGCCTCAGGCGTCTAACAAGCGATATTCACGAATTGGGGGCCGAAAGATGAGTGGGAATGTCTTTACTAAATTGCTTAATCGACTTGCTGATGAGGGTCACGATTTGGCCACTCCGCTTGATTTGAAGGACCATTGGGCCAAACACGGCACAAACCGTTATAGTACCCTAAAATAG

Network for GWHGAAZE007505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06217.13	GAGA_bind	1	284	7.50E-86

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	BBR-BPC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.718
	SRR3591706	second leaf	24.590
	SRR3591707	mature leaf	35.414
	SRR3591708	Shoot apex	43.522
	SRR3591709	Stem	51.091
	SRR3591710	White floral bud	42.978
	SRR3591711	White flower	47.271
	SRR3591712	Green floral bud	31.804
	SRR3591713	Yellow flower	49.704
SRP173429	SRR8316895	Juvenile bud stage	24.474
	SRR8316896	Juvenile bud stage	31.595
	SRR8316897	Juvenile bud stage	12.893
	SRR8316894	Third green stage	12.915
	SRR8316900	Third green stage	27.754
	SRR8316901	Third green stage	30.310
	SRR8316898	Complete white stage	12.864
	SRR8316899	Complete white stage	52.499
	SRR8316903	Complete white stage	19.010
	SRR8316902	Silver flowering stage	16.111
	SRR8316904	Silver flowering stage	16.827
	SRR8316905	Silver flowering stage	7.979
	SRR8316906	Gold flowering stage	34.812
	SRR8316907	Gold flowering stage	41.079
	SRR8316908	Gold flowering stage	41.771
SRP132670	SRR6706286	Control	48.678
	SRR6706287	Light intensity 50%	47.978
	SRR6706288	Light intensity 20%	44.511
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.624
	CNS0095593	Slightly white alabastrum(diploid) 2	24.343
	CNS0095594	Slightly white alabastrum(diploid) 3	23.847
	CNS0095595	Whole white alabastrum(diploid) 2	24.379
	CNS0095596	Whole white alabastrum(diploid) 3	18.849
	CNS0095597	Whole white alabastrum(diploid) 4	25.956
	CNS0095598	Silvery flower (diploied) 1	47.041
	CNS0095599	Silvery flower (diploied) 2	33.632
	CNS0095600	Silvery flower (diploied) 3	37.591
	CNS0095601	Golden flower (diploid) 1	48.314
	CNS0095602	Golden flower (diploid) 2	53.798
	CNS0095603	Golden flower (diploid) 3	53.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.904
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.478
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.961
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.606
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.951
	CNS0095610	Silvery flower (tetraploid) 1	39.473
	CNS0095611	Silvery flower (tetraploid) 2	54.762
	CNS0095612	Silvery flower (tetraploid) 3	40.361
	CNS0095613	Golden flower (tetraploid) 1	37.342
	CNS0095614	Golden flower (tetraploid) 2	43.858
	CNS0095615	Golden flower (tetraploid) 3	67.273
CRA001975	CRR073297	Stem 1	69.013
	CRR073298	Stem 2	55.908
	CRR073299	Stem 3	66.535
	CRR073300	Leaf 1	56.352
	CRR073301	Leaf 2	54.424
	CRR073302	Leaf 3	53.703
	CRR073303	Juvenile bud 1	49.933
	CRR073304	Juvenile bud 2	36.853
	CRR073305	Juvenile bud 3	43.558
	CRR073306	Third green 1	40.340
	CRR073307	Third green 2	34.928
	CRR073308	Third green 3	41.347
	CRR073309	Second white 1	39.953
	CRR073310	Second white 2	45.216
	CRR073311	Second white 3	39.662
	CRR073312	Silver flowering 1	37.083
	CRR073313	Silver flowering 2	38.857
	CRR073314	Silver flowering 3	31.296
	CRR073315	Gold flowering 1	43.268
	CRR073316	Gold flowering 2	53.767
	CRR073317	Gold flowering 3	46.415
	CRR073318	Tawny withering 1	85.251
	CRR073319	Tawny withering 2	73.429
	CRR073320	Tawny withering 3	71.196