Gene detail

Detail information of GWHGAAZE007467

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010097025.1	0	Mitogen-activated protein kinase 7 [Morus notabilis]
Swissprot	tr\|Q40517\|NTF3_TOBAC	0	Mitogen-activated protein kinase homolog NTF3
trEMBL	tr\|W8EEX0\|W8EEX0_9ROSA	0	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}
TAIR10	AT1G10210.2	3E-171	mitogen-activated protein kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45835289	45837440	+
GWHAAZE00000002	mRNA	45835289	45837440	+
GWHAAZE00000002	exon	45835289	45835711	+
GWHAAZE00000002	exon	45836739	45837440	+
GWHAAZE00000002	CDS	45835289	45835711	+
GWHAAZE00000002	CDS	45836739	45837440	+

Transcript Sequence
>GWHTAAZE007475 ATGTCAACTCTAGTTGATCCTCCAAATAATCCTATGTCGCGAGGGAAGCATTATTTCACAATATCGCAAACGGTGTTTGAAATAGATACAAAGTACGTTCCAATTAGACACATAGGAAGAGGAGCGTATGGTGTAGTGTGTTCTTCAGTTAACAGGGAAACAAACGAGAAAGTGGCAATCAAGAAAGTTAGTAATGTATTTGGGAACCGTATTGATGCATTGAGAACCCTTAGAGAGTTGAAGCTTCTTCGGCACATTAGGCACGAGAATGTGATTGCTTTGAAGGATATTATGATGCCCATTCATAGGAATAGCTTCAAAGATGTGTACCTGGTTTATGAATTGATGGATACCGATCTTCATCGCATTATAAAGTCTTCACAACTGCTCTCTAATGATCATTGCAAATTTTTGTTGTTCCAGTTACTTCGTGGTTTAAAGTATCTTCATTCGGCAAATGTTCTTCATCGCGACTTAAAGCCCGGAAACCTCCTAGTCAATGGCAACTGCGACCTTAAAATAGGCGATTTTGGACTAGCACGAATGAGCCGAGACAAGGGCCAGTTCATGACTGAATACGTGGTCACTCGTTGGTACCGTGCACCGGAACTTCTCCTCTGCTGCTACAACTACAACGCTTCAATCGATGTATGGTCTGTTGGATGTATATTTGCCGAACTCCTCGGGCGAAAGCCCATCTTTCCCGGAACCGAGTGCCTCAGTCAACTCAAACTAATAGTCAACATTCTCGGCAGTCAACGTGAAGGTGATCTTGACTTTATAGTCAATCCGAGAGCTAGGAAATTCATTAGATCGCTTCCTTACTCTAGGGGGATTGAGTTTTCTTCTTTGTACCCTCGTGCCGATGGTTTGGCTTTGGATTTGTTGAAGAAAATGCTAGTGTTTAATCCGGCTAAGAGAATTACGGTGTTGGAGGCACTTAATCATCCTTATATATCCAGTCTGTACGATCCAAGCCGGGACTCTCTGGCCCAAGTTCCAGTGGATCTCGATATTGATGAGAAAATGGGAGAGTCCACGATTAGGGAGATTATGTTGAGGGAAATGCTTCATTATCATCCTGATGCTGCTGCTAGTTATTCTAATCAGCTGGTAATGAACTAA

Network for GWHGAAZE007467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	33	319	1.70E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004707	molecular_function	MAP kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.115
	SRR3591706	second leaf	1.251
	SRR3591707	mature leaf	24.230
	SRR3591708	Shoot apex	0.214
	SRR3591709	Stem	0.733
	SRR3591710	White floral bud	90.417
	SRR3591711	White flower	3.261
	SRR3591712	Green floral bud	40.996
	SRR3591713	Yellow flower	1.422
SRP173429	SRR8316895	Juvenile bud stage	0.755
	SRR8316896	Juvenile bud stage	2.297
	SRR8316897	Juvenile bud stage	1.923
	SRR8316894	Third green stage	0.924
	SRR8316900	Third green stage	13.361
	SRR8316901	Third green stage	8.943
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.717
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.260
	SRR8316904	Silver flowering stage	0.760
	SRR8316905	Silver flowering stage	0.240
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.125
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	8.109
	SRR6706287	Light intensity 50%	8.924
	SRR6706288	Light intensity 20%	8.137
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.307
	CNS0095593	Slightly white alabastrum(diploid) 2	6.069
	CNS0095594	Slightly white alabastrum(diploid) 3	9.426
	CNS0095595	Whole white alabastrum(diploid) 2	40.027
	CNS0095596	Whole white alabastrum(diploid) 3	41.722
	CNS0095597	Whole white alabastrum(diploid) 4	70.848
	CNS0095598	Silvery flower (diploied) 1	1.400
	CNS0095599	Silvery flower (diploied) 2	5.259
	CNS0095600	Silvery flower (diploied) 3	2.025
	CNS0095601	Golden flower (diploid) 1	1.980
	CNS0095602	Golden flower (diploid) 2	1.219
	CNS0095603	Golden flower (diploid) 3	1.477
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.438
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.644
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.002
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	113.472
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.731
	CNS0095610	Silvery flower (tetraploid) 1	1.203
	CNS0095611	Silvery flower (tetraploid) 2	4.604
	CNS0095612	Silvery flower (tetraploid) 3	11.588
	CNS0095613	Golden flower (tetraploid) 1	0.653
	CNS0095614	Golden flower (tetraploid) 2	0.241
	CNS0095615	Golden flower (tetraploid) 3	8.842
CRA001975	CRR073297	Stem 1	2.569
	CRR073298	Stem 2	2.274
	CRR073299	Stem 3	1.266
	CRR073300	Leaf 1	17.269
	CRR073301	Leaf 2	6.882
	CRR073302	Leaf 3	3.508
	CRR073303	Juvenile bud 1	23.490
	CRR073304	Juvenile bud 2	16.459
	CRR073305	Juvenile bud 3	2.584
	CRR073306	Third green 1	11.962
	CRR073307	Third green 2	14.027
	CRR073308	Third green 3	11.808
	CRR073309	Second white 1	0.850
	CRR073310	Second white 2	2.412
	CRR073311	Second white 3	1.977
	CRR073312	Silver flowering 1	10.283
	CRR073313	Silver flowering 2	8.994
	CRR073314	Silver flowering 3	6.662
	CRR073315	Gold flowering 1	29.587
	CRR073316	Gold flowering 2	19.763
	CRR073317	Gold flowering 3	17.627
	CRR073318	Tawny withering 1	12.923
	CRR073319	Tawny withering 2	11.874
	CRR073320	Tawny withering 3	12.046