Detail information of GWHGAAZE007460


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDX90676.12.8602E-72BnaA03g41050D [Brassica napus]
Swissprottr|Q6NQL6|LPPE2_ARATH4E-50Lipid phosphate phosphatase epsilon 2, chloroplastic (Precursor)
trEMBLtr|A0A078DN24|A0A078DN24_BRANA1E-72BnaA03g41050D protein {ECO:0000313|EMBL:CDX90676.1}
TAIR10AT5G66450.11E-43Phosphatidic acid phosphatase (PAP2) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4563802745646317-
GWHAAZE00000002mRNA4563802745646317-
GWHAAZE00000002exon4564622545646317-
GWHAAZE00000002exon4564508545645293-
GWHAAZE00000002exon4564493145644986-
GWHAAZE00000002exon4564449545644568-
GWHAAZE00000002exon4564395745644159-
GWHAAZE00000002exon4564181645642062-
GWHAAZE00000002exon4564021745640425-
GWHAAZE00000002exon4564006545640143-
GWHAAZE00000002exon4563802745638143-
GWHAAZE00000002CDS4564622545646317-
GWHAAZE00000002CDS4564508545645293-
GWHAAZE00000002CDS4564493145644986-
GWHAAZE00000002CDS4564449545644568-
GWHAAZE00000002CDS4564395745644159-
GWHAAZE00000002CDS4564181645642062-
GWHAAZE00000002CDS4564021745640425-
GWHAAZE00000002CDS4564006545640143-
GWHAAZE00000002CDS4563802745638143-
Transcript Sequence

Network for GWHGAAZE007460

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01569.22PAP2531792.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07252DOLPP1 N-Glycan biosynthesis map00510

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.468
SRR3591706second leaf1.135
SRR3591707mature leaf3.043
SRR3591708Shoot apex1.989
SRR3591709Stem0.600
SRR3591710White floral bud2.096
SRR3591711White flower1.749
SRR3591712Green floral bud1.107
SRR3591713Yellow flower0.667
SRP173429 SRR8316895Juvenile bud stage 1.529
SRR8316896Juvenile bud stage 1.022
SRR8316897Juvenile bud stage 0.697
SRR8316894Third green stage 0.676
SRR8316900Third green stage 2.473
SRR8316901Third green stage 2.699
SRR8316898Complete white stage 0.954
SRR8316899Complete white stage 2.806
SRR8316903Complete white stage 1.144
SRR8316902Silver flowering stage1.192
SRR8316904Silver flowering stage1.979
SRR8316905Silver flowering stage0.985
SRR8316906Gold flowering stage 3.946
SRR8316907Gold flowering stage 3.716
SRR8316908Gold flowering stage 2.481
SRP132670SRR6706286Control1.784
SRR6706287Light intensity 50%1.819
SRR6706288Light intensity 20%2.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.823
CNS0095593Slightly white alabastrum(diploid) 22.780
CNS0095594Slightly white alabastrum(diploid) 31.720
CNS0095595Whole white alabastrum(diploid) 22.091
CNS0095596Whole white alabastrum(diploid) 32.449
CNS0095597Whole white alabastrum(diploid) 41.762
CNS0095598Silvery flower (diploied) 12.149
CNS0095599Silvery flower (diploied) 21.744
CNS0095600Silvery flower (diploied) 31.888
CNS0095601Golden flower (diploid) 11.459
CNS0095602Golden flower (diploid) 20.920
CNS0095603Golden flower (diploid) 31.109
CNS0095604Slightly white alabastrum(tetraploid) 11.886
CNS0095605Slightly white alabastrum(tetraploid) 21.861
CNS0095606Slightly white alabastrum(tetraploid) 32.335
CNS0095607Whole white alabastrum(tetraploid) 11.141
CNS0095608Whole white alabastrum(tetraploid) 21.562
CNS0095609Whole white alabastrum(tetraploid) 31.620
CNS0095610Silvery flower (tetraploid) 12.021
CNS0095611Silvery flower (tetraploid) 22.037
CNS0095612Silvery flower (tetraploid) 36.473
CNS0095613Golden flower (tetraploid) 10.839
CNS0095614Golden flower (tetraploid) 21.251
CNS0095615Golden flower (tetraploid) 31.197
CRA001975CRR073297Stem 13.320
CRR073298Stem 22.245
CRR073299Stem 32.228
CRR073300Leaf 12.014
CRR073301Leaf 24.223
CRR073302Leaf 32.289
CRR073303Juvenile bud 10.928
CRR073304Juvenile bud 20.964
CRR073305Juvenile bud 31.493
CRR073306Third green 19.745
CRR073307Third green 25.897
CRR073308Third green 36.784
CRR073309Second white 117.856
CRR073310Second white 216.867
CRR073311Second white 312.480
CRR073312Silver flowering 16.967
CRR073313Silver flowering 25.452
CRR073314Silver flowering 34.642
CRR073315Gold flowering 13.032
CRR073316Gold flowering 23.281
CRR073317Gold flowering 32.593
CRR073318Tawny withering 10.384
CRR073319Tawny withering 20.061
CRR073320Tawny withering 30.455