Gene detail

Detail information of GWHGAAZE007453

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007046888.1	0	ATPase family associated with various cellular activities, putative [Theobroma cacao]
Swissprot	tr\|Q8VXX4\|RFC3_ARATH	4E-63	Replication factor C subunit 3
trEMBL	tr\|A0A061DFP5\|A0A061DFP5_THECC	0	ATPase family associated with various cellular activities, putative {ECO:0000313\|EMBL:EOX91045.1}
TAIR10	AT5G27740.1	2E-56	ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45524632	45531620	+
GWHAAZE00000002	mRNA	45524632	45531620	+
GWHAAZE00000002	exon	45524632	45526017	+
GWHAAZE00000002	exon	45526542	45526652	+
GWHAAZE00000002	exon	45526762	45526794	+
GWHAAZE00000002	exon	45527468	45527649	+
GWHAAZE00000002	exon	45527939	45527943	+
GWHAAZE00000002	exon	45528047	45528120	+
GWHAAZE00000002	exon	45529183	45529319	+
GWHAAZE00000002	exon	45529585	45529680	+
GWHAAZE00000002	exon	45530240	45530309	+
GWHAAZE00000002	exon	45530394	45530468	+
GWHAAZE00000002	exon	45530546	45530591	+
GWHAAZE00000002	exon	45531559	45531620	+
GWHAAZE00000002	CDS	45524632	45526017	+
GWHAAZE00000002	CDS	45526542	45526652	+
GWHAAZE00000002	CDS	45526762	45526794	+
GWHAAZE00000002	CDS	45527468	45527649	+
GWHAAZE00000002	CDS	45527939	45527943	+
GWHAAZE00000002	CDS	45528047	45528120	+
GWHAAZE00000002	CDS	45529183	45529319	+
GWHAAZE00000002	CDS	45529585	45529680	+
GWHAAZE00000002	CDS	45530240	45530309	+
GWHAAZE00000002	CDS	45530394	45530468	+
GWHAAZE00000002	CDS	45530546	45530591	+
GWHAAZE00000002	CDS	45531559	45531620	+

Transcript Sequence
>GWHTAAZE007461 ATGGAGACTTCAACTCGACATAGTAGAGCATCTCAGACTCAATCTTCACTAACCTCAAAGCAGAGACAGAGCGGTTATGAGCCCTCTGATACTGAGACTGATTGGCTAGAAACCCCGTGGCATGAACCTAATAGAAAGATTGGAGATGCTGTTTTGGATCAAGGTACAAATCACAGCCCATTGAAACTTAGCAGAAATTCTTCGAAGCGCGAAGTGGCTTCTCTTGTTAAGGTTTCAACCACCAGTCCTGTTCGAAGGAGGCATAGTAAGTCTCCTTACAAGCCAGCACGAAGAGATGACAATAATGGCCATTCACCTAATCATGCTTCTGAGTTACGTAGGAATGTTAGTACCCTTTCACATAGACCTGGACCACCCGATTCTGATCTTCCTAAAAATACTAGCCCCTTTTCAAAATCTGAGCGTAAGCGACATGTTTCTCCCTTTAAGCCCGTTATAGAGAAAAGTGGTTCGGTGAATGAGAGACATGTTTCTCCCTATAAGCCTGCTAGAGAGGACCTGGGTTTGGTAAACGAGAGGCATGTTTCTCCCTACAATCCCACTAGAGAGATACGTGATGCTGGGAATTATGAGATTCCGAGATCAAATGGGAAGCAAGAAACCAGTAAGGGGACTGAGAAATCCAACCGTAGCCATAGATCAGTGTCTGCTTCTAGATCAAAATCAAGAGAAAAGGACCGGGTGGTGAAGAATGAACATAGGGAACAAAAAAGGGAGAGGAAACCTTCCCCTTTGCCAAGGATTAGCCCAAGGAAAGAGAGGGAAGCTACCCATAAACATACCCCTTCGGTCGGTGAAATCAATGAAATGTTTGCAAATGCAAAGATTTCTGAAAGTCCGGTTGGCAATGTTCCAATTGTGGAAAACACGGATTCCATCTCACAAGGTGATATTTTCTTTTCTCACGACCAAACTGCCTTAACTATGCAGAAGATTATCTTTCCAAAAGTTGGTTTCGAAGAAAAAATTAGTACAAAGCCCAAAATGGGGACTCAAAAAGTTCCAAATGGAAGTTCTGATCATAATACCCATGGTATTCCAAATAGTAATGGGTTAAAAAGAACAAAAGCAGATCAGAGCAGTAATATGAGCAATGTTAGTGGAAGGACAACTGAAAGCACGAAGAAATTCACGGCAAACAGACAGAAGAGCCAAAGTGAAGCATGGTTTGCTTGCATCAAAAAGGGACCTTGCCGGACCTCTAAAAAATCTCCAGAAAAAGATAGAGCATTTGATGAAGCTTCGTTTATTGAGAAGGCTTTTGTAGTTGAAAACCTCAGGCAGTTCTGGGCTGATAAGCATAAACCTGCTTCGTTGAATGGATTCACCTGCCACAAACAAGAAGCTCACCTACTTAAGCAACTTGTATCCCACGAAATTTGTCCACACGTTTTTCTCAAGGGACCTCCTGGCTCAGGGAAGAAAGCACTAACAATGGCTTTCCTACGCGATATCTACGGCGACCCTGCTTGGGATATATCCCACGATATAAGATACTTCCAGCTTCAGGAAGCAAGGCCGATGCAAGTAGCCGTTCCTGTAACCTCAAGTGCTCACCATGTGGAGCTCAATGTGTACTCGGAACCTAATGCTAGATATGCACTGATGGCTCTAGTGAAGCAAATAAGCAGCAACCATGCAGTTGCCCCTGAAATCAGCCACGCTCACTTTAAGGCGGATTATTCAGGCCTTAATGATGATGCAGACATCCTTGAATCAGTCAAAAGCCGTTGCAAAGTTCTCAAGGTCGATGCTCCCGTAACTCATGAAATAATGGAAGTTCTTATTCAGATAGCAAGAAAGGAAAACTTTGATCTATCCATGAGTTTTGCCGCTAAGATTGCTACCAAATCAAAACAAAATTTGAGGCAAGCAATCATGGCTCTTGAAGCATGCAAGTCCCACAACTATCCTTTTGCGGAAGATCAGCCAATTTCGATGGGATGGGAAGAGGTTCTGGTGGACCTTGCTGGAGAAATCCTAGCTAATCCATCGAATAAGGGGCTATGTCACATACGAGCAAAGTTTCAAAAGCTTCTACTGGATTTTGTTCACCCAAAACTGATTCTCCAGAAGCTTGTTGAACAGTTCCTTAAGCAAGTTGAGGCTAGTCTGAAGAGGGAAATTTATTATTGGCACGGTTATTATGAGAAGAGACTCCCGACGGGAATGAGTGCTTTACTAAAATTAGAAGAATTTGTGGCCAAGTTCATGGGCATATACAGGAAGAGTTCCGGCAATCATCAGTATCCATAA

Network for GWHGAAZE007453

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10756	RFC3_5	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.623
	SRR3591706	second leaf	3.288
	SRR3591707	mature leaf	3.243
	SRR3591708	Shoot apex	9.184
	SRR3591709	Stem	2.668
	SRR3591710	White floral bud	2.256
	SRR3591711	White flower	2.873
	SRR3591712	Green floral bud	3.693
	SRR3591713	Yellow flower	1.472
SRP173429	SRR8316895	Juvenile bud stage	5.586
	SRR8316896	Juvenile bud stage	5.805
	SRR8316897	Juvenile bud stage	0.651
	SRR8316894	Third green stage	2.545
	SRR8316900	Third green stage	7.743
	SRR8316901	Third green stage	6.307
	SRR8316898	Complete white stage	0.533
	SRR8316899	Complete white stage	5.950
	SRR8316903	Complete white stage	1.214
	SRR8316902	Silver flowering stage	0.467
	SRR8316904	Silver flowering stage	0.412
	SRR8316905	Silver flowering stage	0.208
	SRR8316906	Gold flowering stage	0.885
	SRR8316907	Gold flowering stage	1.103
	SRR8316908	Gold flowering stage	0.338
SRP132670	SRR6706286	Control	3.078
	SRR6706287	Light intensity 50%	3.637
	SRR6706288	Light intensity 20%	4.462
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.535
	CNS0095593	Slightly white alabastrum(diploid) 2	5.257
	CNS0095594	Slightly white alabastrum(diploid) 3	6.165
	CNS0095595	Whole white alabastrum(diploid) 2	5.272
	CNS0095596	Whole white alabastrum(diploid) 3	5.968
	CNS0095597	Whole white alabastrum(diploid) 4	5.571
	CNS0095598	Silvery flower (diploied) 1	5.208
	CNS0095599	Silvery flower (diploied) 2	2.332
	CNS0095600	Silvery flower (diploied) 3	1.439
	CNS0095601	Golden flower (diploid) 1	2.629
	CNS0095602	Golden flower (diploid) 2	1.963
	CNS0095603	Golden flower (diploid) 3	1.968
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.627
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.902
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.874
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.402
	CNS0095610	Silvery flower (tetraploid) 1	0.069
	CNS0095611	Silvery flower (tetraploid) 2	0.136
	CNS0095612	Silvery flower (tetraploid) 3	0.159
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.157
CRA001975	CRR073297	Stem 1	7.064
	CRR073298	Stem 2	7.228
	CRR073299	Stem 3	4.362
	CRR073300	Leaf 1	5.401
	CRR073301	Leaf 2	5.750
	CRR073302	Leaf 3	3.781
	CRR073303	Juvenile bud 1	4.032
	CRR073304	Juvenile bud 2	2.335
	CRR073305	Juvenile bud 3	3.795
	CRR073306	Third green 1	0.181
	CRR073307	Third green 2	0.128
	CRR073308	Third green 3	0.317
	CRR073309	Second white 1	0.151
	CRR073310	Second white 2	0.241
	CRR073311	Second white 3	0.213
	CRR073312	Silver flowering 1	0.415
	CRR073313	Silver flowering 2	0.530
	CRR073314	Silver flowering 3	0.150
	CRR073315	Gold flowering 1	1.153
	CRR073316	Gold flowering 2	1.785
	CRR073317	Gold flowering 3	0.986
	CRR073318	Tawny withering 1	3.137
	CRR073319	Tawny withering 2	3.341
	CRR073320	Tawny withering 3	3.614