Gene detail

Detail information of GWHGAAZE007449

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009596291.1	7.8351E-124	PREDICTED: syntaxin-112-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9ZPV9\|SY112_ARATH	2E-102	Syntaxin-112
trEMBL	tr\|M5VW58\|M5VW58_PRUPE	6E-124	Uncharacterized protein {ECO:0000313\|EMBL:EMJ05632.1}
TAIR10	AT2G18260.1	6E-79	syntaxin of plants 112

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45458397	45459137	-
GWHAAZE00000002	mRNA	45458397	45459137	-
GWHAAZE00000002	exon	45458397	45459137	-
GWHAAZE00000002	CDS	45458397	45459137	-

Transcript Sequence
>GWHTAAZE007457 ATGGAAGACATCACCAATCTCCTTTTTGATCTTCAAAATCTAAATGAAGAGACCAAATCCACTCACAGTCCTAAAGTTCTTCGTGGGCTAAGGGACCGAATGGATTCCGATATGGTTGATGTCCTTCGCAAGGCCAAAATCGTCAAGGCAAGGCTCGAATCACTAGACAAATCAAATATGGCTAATCGAAAAATATCAATCGAGTATAGAGAAGGCAGCGCAGTTGATCGAACAAGGAATTCACTCACCAACGGGCTGAGAATGAAACTCAGGGACATAATGAATGATTTCCAATCATTGAGAGAGAAAATAATAACTGATCATAAAGAAAACTTGAAGAGAAGGTACTATAACCAAACTGGCGAAAACCCTAGCTATGAATTGATTGAGAAGATGGCTTTTGGGAAAGTTGAAATGTTTGAAGGGGAAAGATATCAAAAAAATTCCGAAGTGAATTTGGAGAATAAAGAGAGGCATGAAGCTATGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTCTTGATATGGCTATTTTGGTCGAGACTCAAGGGGAAGAGATCGATGATATTGAGCAAAATGTGGCAAATGCGAAAAAATTTATGAGTGGTGGAACTAACAGTCTGTTTTACGCTAAGCAAATGAAGAAGAAAGGAAAGAAATGGGTTTATTGGGTGTGGGCTGTGGGGTTCATCATATTACTGATATGCTTCATTGCTATGTTATCTTCTTGA

Network for GWHGAAZE007449

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00804.26	Syntaxin	1	187	7.60E-49
PF05739.20	SNARE	190	238	5.90E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08486	STX1B_2_3	SNARE interactions in vesicular transport	map04130
K08486	STX1B_2_3	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.490
	SRR3591706	second leaf	0.554
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	5.105
	SRR3591709	Stem	0.762
	SRR3591710	White floral bud	0.854
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.736
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.351
	SRR8316896	Juvenile bud stage	0.276
	SRR8316897	Juvenile bud stage	0.501
	SRR8316894	Third green stage	0.082
	SRR8316900	Third green stage	2.414
	SRR8316901	Third green stage	0.436
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.084
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.673
	SRR6706287	Light intensity 50%	0.833
	SRR6706288	Light intensity 20%	0.508
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.131
	CNS0095593	Slightly white alabastrum(diploid) 2	0.248
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	6.064
	CNS0095596	Whole white alabastrum(diploid) 3	2.675
	CNS0095597	Whole white alabastrum(diploid) 4	5.692
	CNS0095598	Silvery flower (diploied) 1	1.236
	CNS0095599	Silvery flower (diploied) 2	0.092
	CNS0095600	Silvery flower (diploied) 3	0.103
	CNS0095601	Golden flower (diploid) 1	0.096
	CNS0095602	Golden flower (diploid) 2	0.054
	CNS0095603	Golden flower (diploid) 3	0.204
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.309
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.728
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.273
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.175
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.995
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.052
	CNS0095612	Silvery flower (tetraploid) 3	0.174
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.434
	CRR073298	Stem 2	0.238
	CRR073299	Stem 3	0.082
	CRR073300	Leaf 1	0.949
	CRR073301	Leaf 2	0.231
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.029
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.051
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.003
	CRR073318	Tawny withering 1	1.204
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.368