Gene detail

Detail information of GWHGAAZE007428

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006366995.1	0	PREDICTED: putative proline-rich receptor-like protein kinase PERK6-like, partial [Solanum tuberosum]
Swissprot	tr\|Q9ZNQ8\|PERK4_ARATH	0	Proline-rich receptor-like protein kinase PERK4
trEMBL	tr\|M1BIA2\|M1BIA2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400045838}
TAIR10	AT2G18470.1	4E-145	roline-rich extensin-like receptor kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45171945	45175324	+
GWHAAZE00000002	mRNA	45171945	45175324	+
GWHAAZE00000002	exon	45171945	45172485	+
GWHAAZE00000002	exon	45173150	45173236	+
GWHAAZE00000002	exon	45173316	45173386	+
GWHAAZE00000002	exon	45173489	45173565	+
GWHAAZE00000002	exon	45174086	45174236	+
GWHAAZE00000002	exon	45174404	45174565	+
GWHAAZE00000002	exon	45175058	45175324	+
GWHAAZE00000002	CDS	45171945	45172485	+
GWHAAZE00000002	CDS	45173150	45173236	+
GWHAAZE00000002	CDS	45173316	45173386	+
GWHAAZE00000002	CDS	45173489	45173565	+
GWHAAZE00000002	CDS	45174086	45174236	+
GWHAAZE00000002	CDS	45174404	45174565	+
GWHAAZE00000002	CDS	45175058	45175324	+

Transcript Sequence
>GWHTAAZE007436 AGTGAGTATTACAATCCCAGTACGGCCCAGTGGAACAGTCCACCAGACCATGTGGTCAAGCTCACTCCACCACCTGGCATGACGCCAGGTGTACCCAGTGGCGGCGGGGCTGTGTGGCACCACCAAACCCCACCACCAATGGCACCACAAAACACGAGCAAAGACTTTAGTGGCGGTACCCCTCCACATGTGCCATTGTCACCTCTAGGACCAAATATGGCCCTTGGGTTCTCGAAGAGCCAGTTCACTTATGAGGAGCTAGCAACAGCCACGGGTGGGTTTTCGAAAGGGAACCTCCTGGGCCAAGGTGGGTTCGGGTATGTTCATAAGGGGGTGTTGCCAAACGGGCAAGAGGTGGCGGTGAAGAGCTTGAAAACGGGGAGTGGGCAAGGGGAACGGGAGTTTCAGGCCGAGGTTGAGATTATTAGTCGAGTCCATCATAGGCATTTGGTGTCACTTGTTGGGTATTGTATTGCTGATGGGCAGAGGATGTTGGTTTATGAATTCGTTCCGAATAAGACTATGGAGTTTCATCTTCATGGAAAGAATCAGCCAGTCATGGATTGGTCAACTAGACTTCGTATCGCATTGGGATCAGCCAAAGGGCTTGGTTATCTTCATGAAGACTGTCACCCTAAGATTATCCATCGTGACATCAAAGCTGCTAATATTCTCCTCGACAACAACTTTGAAGCAATGGTGGCGGATTTCGGGTTGGCTAAACTGTCTTCTGACAATTACACCCACATCTCTACTCGTGTTATGGGAACTTTCGGGTACATGGCTCCAGAGTACGCATCAAGCGGGAAGTTAACCGAGAAATCTGACGTTTTCTCGTTTGGGGTCATGCTCTTAGAACTCATAACTGGACGACGACCCCTTGATCTTTCGGGTAAATACATGGAAGAAGACAGCTTAGTAGACTGGGCTAGGCTTCTTCTAACAAAAGCAATAGAAGAAGGGGAGTATAAGGAGCTGGTAGATCCACGTTTGGGAGATAACTATAATCCCCAAGAGATGGCATGCATGGTGACTTGTGCTGCAGCTAGTATTCGCCATTCGGCTAGAAGGCGACCAAAGATGAGCCAGATTGTGCGTGTGTTGGACGGAGATTCATCGCTGGATGACCTGAAGGACGGGAAAGGAGGCCATGGAGCAAACAACGGGAACACTGAAACCTATGACACTAACGATTACAATGCCGACATGATGAAGTTCAAGAAGATGGTAATGACAAGCCAAGATTTCACTAGCAGCGAGTATGGTGGGACCAGCGATTATGGTCACCCATCCTCTACAAGCAGTGACTCGAGAGAGATGGATAATCATTATGGGAACACGAGGCGAAAATTCTAA

Network for GWHGAAZE007428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	97	367	5.00E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.077
	SRR3591706	second leaf	0.159
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.464
	SRR3591709	Stem	0.169
	SRR3591710	White floral bud	78.821
	SRR3591711	White flower	4.013
	SRR3591712	Green floral bud	54.053
	SRR3591713	Yellow flower	2.670
SRP173429	SRR8316895	Juvenile bud stage	1.144
	SRR8316896	Juvenile bud stage	0.992
	SRR8316897	Juvenile bud stage	0.238
	SRR8316894	Third green stage	0.382
	SRR8316900	Third green stage	18.204
	SRR8316901	Third green stage	10.101
	SRR8316898	Complete white stage	0.039
	SRR8316899	Complete white stage	0.290
	SRR8316903	Complete white stage	0.039
	SRR8316902	Silver flowering stage	0.864
	SRR8316904	Silver flowering stage	2.367
	SRR8316905	Silver flowering stage	0.237
	SRR8316906	Gold flowering stage	0.887
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.110
SRP132670	SRR6706286	Control	16.315
	SRR6706287	Light intensity 50%	18.642
	SRR6706288	Light intensity 20%	15.613
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.959
	CNS0095593	Slightly white alabastrum(diploid) 2	2.084
	CNS0095594	Slightly white alabastrum(diploid) 3	1.775
	CNS0095595	Whole white alabastrum(diploid) 2	41.264
	CNS0095596	Whole white alabastrum(diploid) 3	51.304
	CNS0095597	Whole white alabastrum(diploid) 4	81.211
	CNS0095598	Silvery flower (diploied) 1	3.047
	CNS0095599	Silvery flower (diploied) 2	13.582
	CNS0095600	Silvery flower (diploied) 3	2.110
	CNS0095601	Golden flower (diploid) 1	4.338
	CNS0095602	Golden flower (diploid) 2	1.518
	CNS0095603	Golden flower (diploid) 3	1.525
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.238
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	74.929
	CNS0095608	Whole white alabastrum(tetraploid) 2	116.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.641
	CNS0095610	Silvery flower (tetraploid) 1	1.544
	CNS0095611	Silvery flower (tetraploid) 2	6.972
	CNS0095612	Silvery flower (tetraploid) 3	17.680
	CNS0095613	Golden flower (tetraploid) 1	2.554
	CNS0095614	Golden flower (tetraploid) 2	0.848
	CNS0095615	Golden flower (tetraploid) 3	6.943
CRA001975	CRR073297	Stem 1	4.731
	CRR073298	Stem 2	1.845
	CRR073299	Stem 3	1.459
	CRR073300	Leaf 1	28.539
	CRR073301	Leaf 2	10.757
	CRR073302	Leaf 3	2.198
	CRR073303	Juvenile bud 1	36.066
	CRR073304	Juvenile bud 2	19.961
	CRR073305	Juvenile bud 3	3.732
	CRR073306	Third green 1	17.662
	CRR073307	Third green 2	15.149
	CRR073308	Third green 3	17.684
	CRR073309	Second white 1	1.101
	CRR073310	Second white 2	2.775
	CRR073311	Second white 3	4.992
	CRR073312	Silver flowering 1	19.545
	CRR073313	Silver flowering 2	21.547
	CRR073314	Silver flowering 3	10.558
	CRR073315	Gold flowering 1	12.376
	CRR073316	Gold flowering 2	4.250
	CRR073317	Gold flowering 3	3.688
	CRR073318	Tawny withering 1	16.402
	CRR073319	Tawny withering 2	14.585
	CRR073320	Tawny withering 3	14.951