Gene detail

Detail information of GWHGAAZE007416

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004251659.1	0	PREDICTED: splicing factor U2af large subunit A-like isoform X1 [Solanum lycopersicum]
Swissprot	tr\|Q9ZR40\|U2A2B_NICPL	0	Splicing factor U2af large subunit B
trEMBL	tr\|K4DBW3\|K4DBW3_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008750.1.1}
TAIR10	AT1G60900.1	7E-157	U2 snRNP auxilliary factor, large subunit, splicing factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	44906859	44915005	+
GWHAAZE00000002	mRNA	44906859	44915005	+
GWHAAZE00000002	exon	44906859	44906966	+
GWHAAZE00000002	exon	44907063	44907082	+
GWHAAZE00000002	exon	44908485	44908598	+
GWHAAZE00000002	exon	44910329	44910415	+
GWHAAZE00000002	exon	44910495	44910577	+
GWHAAZE00000002	exon	44911207	44911280	+
GWHAAZE00000002	exon	44911362	44911406	+
GWHAAZE00000002	exon	44911526	44911585	+
GWHAAZE00000002	exon	44912095	44912155	+
GWHAAZE00000002	exon	44912247	44912359	+
GWHAAZE00000002	exon	44913048	44913494	+
GWHAAZE00000002	exon	44914005	44914146	+
GWHAAZE00000002	exon	44914582	44914649	+
GWHAAZE00000002	exon	44914946	44915005	+
GWHAAZE00000002	CDS	44906859	44906966	+
GWHAAZE00000002	CDS	44907063	44907082	+
GWHAAZE00000002	CDS	44908485	44908598	+
GWHAAZE00000002	CDS	44910329	44910415	+
GWHAAZE00000002	CDS	44910495	44910577	+
GWHAAZE00000002	CDS	44911207	44911280	+
GWHAAZE00000002	CDS	44911362	44911406	+
GWHAAZE00000002	CDS	44911526	44911585	+
GWHAAZE00000002	CDS	44912095	44912155	+
GWHAAZE00000002	CDS	44912247	44912359	+
GWHAAZE00000002	CDS	44913048	44913494	+
GWHAAZE00000002	CDS	44914005	44914146	+
GWHAAZE00000002	CDS	44914582	44914649	+
GWHAAZE00000002	CDS	44914946	44915005	+

Transcript Sequence
>GWHTAAZE007424 ATGGCGGAGGAGGAAGGCAGGTACGAAGGTAATGGAGAAGATCATCTCCAAAGCAATGGCTCATCGCCTCCTCATAGAGAAGATAATAATTCCGATTCCAGGTCACAGTGGACTGGTTGTGATGTCAGGCGGAGAGAGTACGACAGAGATAGAGAGGAGAAACGTAGCCATAGGTCTGAATCTCGCTCAAGGGCTAGATCTGAACACAGATCGCGGTCTCGTTCTCGTTCACGCTCTAAAAGCAACTGTTATATGGGTTACCCTGATACACTTCCCAGCACTTACATTATTATATCACTGCCTGTCAACACACTTGCAATTCTATTGTGCAAAAGAGTCAGTGGGTTTGACATGGCGCCTCCTGCTTCTGCAATGTTAGCTGGGGCTGCTGCTGTTGCTGCTGCTGCTGTAGGTCAAATTCCGGGGACCACTCCCCCAGCCATTCCTGGAATGCTCCCAAACATGTTCCAATTAGCAACTGGGCCGTTTGGATCTCTTCCGGTTATGCCTGTTCAGGCAATGACTCAGCAGGCTACTAGACATGCTAGACGGGTTTATGTTGGCGGTCTCCCTCCTACTGCAAATGAACAGTCAGTGGCAACCTACTTTAGCCATGTTATGTCTGCAATTGGAGGAAACACTGCAGGCCCTGGCGATGCTGTAGTCAATGTTTATATAAACCACGAGAAGAAGTTTGCTTTCGTGGAAATGAGATCTGTTGAGGAGGCCAGTAATGCCATGGCTTTGGACGGTATTATTTTTGAGGGAGCGCCAGTAAAGGTCAGGAGACCTAGTGATTACAATCCGTCGCTGGCTGCTACTCTTGGTCCGAGCCAACCTAATCCCAACCTCAACCTGGGTGCTGTTGGGCTATCACCGGGTTCCGCTGGTGGGCTTGAGGGTCCTGACCGTATCTTTGTTGGAGGGCTCCCCTACTATTTCACAGAAGCACAGATCAGGGAGCTACTAGAGTCTTTCGGTCCTCTTCGAGGTTTTGATCTCGTGAAGGACAGAGAAACCGGCAACTCAAAAGGCTATGCCTTCTGTGTCTACCAGGATCTTTCTGTTACGGATATCGCTTGTGCAGCTCTTAATGGAATCAAAATGGGAGATAAAACTCTTACGGTTAGGCGTGCTAATCAGGGCACTACGCAACCTAAACCCGAGCAAGAGAGTGTATTGTTGCACGCACAACAACAAATAGCAATGCAGAGGCTCATGTTTCAGCCTCCTCCACCACCTCTTGGCACCAAGATTTTGTGTTTAACTCAAGTGGTTACTGAGGATGAGCTCAAAGATGATGAGGACTATGAAGACATTGTAGAAGACATGAGATTAGAATGCGGAAAATTTGGTAACTTAGTGAACGTTGTCATCCCACGACCAAAACCCAATGGTGAACCATCACCAGGTGTTGGAAAGATGGAGGCTACTACTGTTAGATTTGAGTTTCTAGCCTTTGTTGGAGAGCTTGACTTGTAG

Network for GWHGAAZE007416

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	305	374	2.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12837	U2AF2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006397	biological_process	mRNA processing
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.039
	SRR3591706	second leaf	38.456
	SRR3591707	mature leaf	35.343
	SRR3591708	Shoot apex	54.203
	SRR3591709	Stem	52.513
	SRR3591710	White floral bud	50.604
	SRR3591711	White flower	55.893
	SRR3591712	Green floral bud	43.898
	SRR3591713	Yellow flower	48.881
SRP173429	SRR8316895	Juvenile bud stage	35.385
	SRR8316896	Juvenile bud stage	49.390
	SRR8316897	Juvenile bud stage	25.116
	SRR8316894	Third green stage	21.749
	SRR8316900	Third green stage	46.148
	SRR8316901	Third green stage	47.455
	SRR8316898	Complete white stage	25.145
	SRR8316899	Complete white stage	60.826
	SRR8316903	Complete white stage	46.196
	SRR8316902	Silver flowering stage	36.511
	SRR8316904	Silver flowering stage	47.046
	SRR8316905	Silver flowering stage	20.780
	SRR8316906	Gold flowering stage	66.107
	SRR8316907	Gold flowering stage	71.432
	SRR8316908	Gold flowering stage	78.016
SRP132670	SRR6706286	Control	48.472
	SRR6706287	Light intensity 50%	51.271
	SRR6706288	Light intensity 20%	52.602
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.408
	CNS0095593	Slightly white alabastrum(diploid) 2	28.567
	CNS0095594	Slightly white alabastrum(diploid) 3	18.892
	CNS0095595	Whole white alabastrum(diploid) 2	20.311
	CNS0095596	Whole white alabastrum(diploid) 3	17.786
	CNS0095597	Whole white alabastrum(diploid) 4	17.139
	CNS0095598	Silvery flower (diploied) 1	32.833
	CNS0095599	Silvery flower (diploied) 2	27.150
	CNS0095600	Silvery flower (diploied) 3	30.945
	CNS0095601	Golden flower (diploid) 1	24.535
	CNS0095602	Golden flower (diploid) 2	30.703
	CNS0095603	Golden flower (diploid) 3	30.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.024
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.425
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.344
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.342
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.238
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.220
	CNS0095610	Silvery flower (tetraploid) 1	48.950
	CNS0095611	Silvery flower (tetraploid) 2	34.592
	CNS0095612	Silvery flower (tetraploid) 3	34.572
	CNS0095613	Golden flower (tetraploid) 1	33.128
	CNS0095614	Golden flower (tetraploid) 2	37.370
	CNS0095615	Golden flower (tetraploid) 3	39.624
CRA001975	CRR073297	Stem 1	52.516
	CRR073298	Stem 2	47.465
	CRR073299	Stem 3	43.397
	CRR073300	Leaf 1	49.392
	CRR073301	Leaf 2	50.726
	CRR073302	Leaf 3	33.552
	CRR073303	Juvenile bud 1	39.251
	CRR073304	Juvenile bud 2	26.653
	CRR073305	Juvenile bud 3	44.809
	CRR073306	Third green 1	17.277
	CRR073307	Third green 2	12.510
	CRR073308	Third green 3	15.184
	CRR073309	Second white 1	11.809
	CRR073310	Second white 2	17.171
	CRR073311	Second white 3	12.468
	CRR073312	Silver flowering 1	16.594
	CRR073313	Silver flowering 2	17.793
	CRR073314	Silver flowering 3	19.720
	CRR073315	Gold flowering 1	16.818
	CRR073316	Gold flowering 2	23.111
	CRR073317	Gold flowering 3	10.834
	CRR073318	Tawny withering 1	36.016
	CRR073319	Tawny withering 2	32.363
	CRR073320	Tawny withering 3	37.326